LOCUS       XM_039089263            6620 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cut-like homeobox 2 (Cux2), transcript
            variant X18, mRNA.
ACCESSION   XM_039089263
VERSION     XM_039089263.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089263.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6620
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6620
                     /gene="Cux2"
                     /gene_synonym="Cutl2"
                     /note="cut-like homeobox 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:288665"
                     /db_xref="RGD:1305967"
     CDS             143..4477
                     /gene="Cux2"
                     /gene_synonym="Cutl2"
                     /codon_start=1
                     /product="homeobox protein cut-like 2 isoform X7"
                     /protein_id="XP_038945191.1"
                     /db_xref="GeneID:288665"
                     /db_xref="RGD:1305967"
                     /translation="MVAPVLKSFQAEVVALSKRSQEAEAAFLSVYKQLIEAPDPVPSV
                     EVARTLDDRLQRPSFHPSGQRLRDVHISWKRCPEPPSAREQNEGTCPTGHTPANGNHL
                     PGPEDTLVTDTLLQKDEAERQKGLQEVHVTLAARLGEAEEKIKVLHSALKATQTELLE
                     LRRKYDEEAASKADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSP
                     QGPGGEKVSFALCSGPRLEAALASKDREILRLLKDAQQLRHSLQELEEVSANQIADLE
                     RQLAAKSEAIEKLQEKLEAQADYEEIKTELSILRAMKLASSTCSLPQPCFPSPQALGK
                     PDDPLLMAKDAFFPTQKLLLEKPALLASPEEDPSEDDSIKGSLGMEPSYPPQLPPPPG
                     PEDPLSPSPTQPLLGPSLGPDGPRTFSLSPFPSLAPGERLAGDPLLSKHMMAPVAFKG
                     ETGNLLAFPPAFYGGAKPPTAPAAPVPGPEPSGAPEPVDGAGPEEEQLDTAEIAFQVK
                     EQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQN
                     VLALRTIQVRQRGPTAATFVPPPGSITPRIRTPETGSDDAIKSILEQAKKEIESQKGG
                     ESKNSPASVSIPNGTASSSTSEDAIKNILEQARREMQAQQQALLEMESGPRGRSVPPS
                     PPERPSPATMSQNGALACVKQEDGGCSSSSSGSAQAPLAVLSPAAFVQRIIRKVKSEI
                     GDAGYFDHHWASDRGLLSRPYASVSPSLSSSSSYSGQPNGRAWPRGDEATIAPEDEAA
                     TGMGEDEAPRVGELKAEAGVSEVGGGRLPYYPAYVPRTLKPTVPPLTPEQYELYMYRE
                     VDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFI
                     RMQLWLSDQLGQGQAPNQQPSASQASPTEPTSSPSPPPSPTEPEKTSQEPLGLSLESS
                     KENQQPEGRASSTLGGKPLSSSQTTGGIQEMVAMSPELDTYSITKRVKEVLTDNNLGQ
                     RLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMRLWLSDPHNVEKLRDVKKL
                     EKKAYLKRRYGLISTGSDSESPAAHSECPSPCLQPQELSLMQAKKPRVVLAPAEKEAL
                     RKAYQLEPYPSQQTIELLSFQLNLKTNTVVNWFHNYRSRMRREMLVEGTQDDPDFDPS
                     GGSSVLPSGHTHTDPTPQSPDSEIEDQKPPMKSLELQEPESPVHQAAPDRAVVKIKQE
                     EGLEVDGDSQPQDIGDPDRGQGGPKEEDTHPLGNNELSELVPGPFLPGTPNPDCSSLH
                     TPQAKETGEQVHSEPLSFKSTSESSCCSLEGPPNSPSAISSPDLMTCVSPAPSSSAPI
                     SPSLPGTLPAKVPSTSPTADPAAALHPSTKVNPNLQRRHEKMANLNSIIYRLERAANR
                     EEALEWEF"
ORIGIN      
        1 tctgagaccc tctggccaga aggagcttaa ttctgtcgcc tcagagctgt ctgtgccaca
       61 ggaggaaagc gagcattctc ctaaacgttt aattgaactc cgccgggaat ttaagaaaaa
      121 tgtgccagag ggaatcagag cgatggtagc cccagtgctg aaaagcttcc aagctgaggt
      181 ggtggctctc agtaagagaa gtcaggaggc agaggcagca ttcctgagtg tttataagca
      241 attaattgaa gcgccagacc ctgtcccgtc ggttgaggtg gcgcggactc tagacgacag
      301 actgcagcgt cccagcttcc accccagtgg gcagcgccta cgagacgtgc acatctcgtg
      361 gaagaggtgc ccagagccac ccagtgccag agagcagaac gaggggacgt gtcccaccgg
      421 gcacacgcca gccaacggta accacctgcc aggtcccgag gacaccctcg tgacagacac
      481 cttgctgcag aaggatgagg ccgagagaca gaagggcctc caagaagtcc acgtcacctt
      541 ggcagccagg ctgggggagg cagaggagaa aatcaaggtg ttacattcag cgctaaaggc
      601 cacacagacg gagctgctgg agctgaggag gaaatacgat gaggaggctg catccaaggc
      661 cgatgaggtc ggcttgatca tgacgaacct ggagaaggcc aaccagcgag cagaggctgc
      721 ccagcgggag gtagaaagcc tccgggagca gctggcatcg gtcaacagct ccattcgcct
      781 ggcttgctgc tccccgcagg gacccggtgg ggagaaggtg agcttcgccc tgtgctcagg
      841 gccccggctg gaggcagcgc tggcttccaa ggacagggag atcctcaggc tgctgaagga
      901 cgcccagcag ctgcggcact ctctgcagga gctggaagag gtctcagcca accaaatcgc
      961 tgatctggag cggcagctag cggccaagtc tgaggccata gagaaactcc aagaaaagct
     1021 ggaggcccag gctgactatg aagagattaa aacagagctg agcatcctga gagccatgaa
     1081 gctggcctcc agcacgtgca gcctcccaca gccttgcttc ccctcccctc aggcgctggg
     1141 caagcctgac gacccactgc tcatggccaa ggatgccttc ttccccacac agaagctcct
     1201 gctggaaaag cccgcgctgc tggccagccc tgaggaggac ccctcggagg atgactctat
     1261 caagggctca ctgggcatgg agccctccta ccctcctcag cttccacctc cgccaggccc
     1321 tgaagacccg ctgtccccaa gccctacgca gcccctgctg ggccccagcc tgggtcctga
     1381 tggaccaagg actttctcgc tgtccccctt ccccagcctg gcaccggggg agaggctggc
     1441 tggggaccca ctgctgtcca aacatatgat ggccccagtt gccttcaaag gggaaacggg
     1501 caacctgctg gcattcccac cggccttcta tggcggtgcc aagcctccaa cggctcctgc
     1561 cgccccagtg cccggccctg agccctctgg ggccccagag cctgtggacg gggctgggcc
     1621 agaggaggag cagctggaca cggccgagat cgccttccag gtgaaggagc agcttctgaa
     1681 gcacaacatt ggccagcgtg tgtttggcca ctatgtgctg ggactgtcgc agggctcggt
     1741 gagtgagatc ctggcacggc ccaagccgtg gcgcaagctc acggtgaagg gcaaggagcc
     1801 cttcatcaag atgaagcagt tcctgtcgga tgagcagaac gtgctggccc tgcgcaccat
     1861 ccaggtgagg cagcgaggcc ccacagccgc caccttcgtg cctcccccag gcagcatcac
     1921 cccgagaatc cgaactcctg agaccggctc agacgacgcc atcaagagta tcctggagca
     1981 ggccaagaag gagattgagt ctcagaaagg gggtgagtcc aagaactccc ctgcctccgt
     2041 gagcatcccc aacggcacag cttcctccag cacctcggaa gacgccatca agaacattct
     2101 ggaacaagcc cgccgcgaaa tgcaagccca gcagcaggcc ctgctggaga tggagtcggg
     2161 tcccaggggc cgctcagtgc ctccctctcc tccggagcgg ccctcgccag ccactatgag
     2221 ccagaatggg gccctggcct gcgtgaagca ggaagacggc ggctgcagca gcagcagtag
     2281 cggcagtgcg caggcgccgc ttgctgtcct gtcccccgct gcatttgtgc agcggatcat
     2341 ccgcaaggtg aagtcagaga tcggcgacgc tggctacttt gatcaccact gggcatcaga
     2401 ccgtggtctg ctcagccgtc cctacgcctc cgtgtcacct tccctctcct cctcctccag
     2461 ctactcggga cagcccaatg ggcgagcctg gccccgtggg gacgaggcaa ccattgcccc
     2521 tgaggacgaa gcggctacgg gcatggggga ggacgaggcc cccagggtgg gagagctcaa
     2581 ggccgaggcc ggagtctccg aggtgggtgg cgggcgactg ccctactacc cagcgtatgt
     2641 gccccgcaca ctcaagccca ctgtgccgcc cctaacaccc gagcaatacg agctatacat
     2701 gtaccgggag gtagacactc tggagctcac ccgccaggtc aaggagaagc tagccaagaa
     2761 cggcatctgc cagcgcatct ttggggagaa ggtcctggga ctgtctcagg gcagcgtgag
     2821 tgacatgctg tcacggccaa agccatggag caagctgaca cagaagggcc gggagccttt
     2881 catccgcatg cagttgtggc tatcagacca gctgggccag ggccaggccc caaaccagca
     2941 gcccagcgct agccaggcca gccccacgga gccaacgtcc tcaccatcac ctcccccaag
     3001 ccccacggag cctgaaaaga cttcccagga gcctctgggc ctgtccctag aaagcagcaa
     3061 ggagaatcag caaccagagg gccgggccag ctccaccctg ggtgggaagc ccctctcaag
     3121 cagccagact acggggggca tccaggagat ggtggccatg tccccagagc tggacacata
     3181 ctccatcacc aagagagtca aggaggtcct cacggacaac aacctagggc agcggttgtt
     3241 tggtgagagc atcctggggc taacacaggg ctccgtgtca gacctgctgt cgaggcccaa
     3301 gccctggcac aagctgagct tgaagggccg ggagcccttt gtgcgcatgc ggctgtggct
     3361 gagcgacccc cacaatgtgg aaaagcttcg agatgtgaag aagctggaga agaaagccta
     3421 tctgaaacgc cgatacgggc tcatcagcac gggctctgac agcgagtcac cggcagctca
     3481 ctccgagtgt cccagcccat gtctgcagcc gcaggagttg agcctcatgc aggccaagaa
     3541 gccacgtgtg gtgctggcac cggccgagaa ggaggctctg cggaaggcct accagctaga
     3601 gccctacccc tcacagcaga ccatagagtt gctctctttc cagctcaacc tcaagacaaa
     3661 cactgtcgtc aactggttcc acaactacag gtccaggatg cgccgggaga tgctggtgga
     3721 gggaacacag gatgacccag actttgaccc aagtgggggc tccagtgtcc tgccatcagg
     3781 ccacacccac acagacccca ccccgcagag ccctgactca gagattgagg accaaaagcc
     3841 ccccatgaag agcctggagc tgcaggaacc tgagagtccc gtacaccaag cagccccaga
     3901 cagggctgtg gtgaagatta agcaggaaga gggtttagag gtggatgggg acagccagcc
     3961 ccaggacata ggggatccag acagagggca aggtggcccc aaagaggagg atactcaccc
     4021 tctggggaac aatgaactct cagagctggt ccccgggcct ttccttccag gcacacccaa
     4081 tccagactgc tcttcattgc acacccccca agcaaaagag actggggaac aggttcactc
     4141 agagcctctg agtttcaagt ccacctctga atcctcatgc tgcagcctgg aggggccacc
     4201 gaactctccc tctgccatct cctcgccaga cctcatgaca tgtgtgtcac ccgccccttc
     4261 ctcctcagcc cccatctccc catccctacc tggcacccta cctgccaaag tgccgagtac
     4321 cagtcccact gctgacccag ctgcagcctt gcaccccagc actaaggtga accccaactt
     4381 gcagcggcgg catgagaaaa tggccaactt gaacagtata atctaccgac tggagagggc
     4441 tgccaaccgg gaagaggctc tggagtggga attctgaagc tggggcaagg gacatacccc
     4501 agaggtcacc ttccctccct ccctcctgcc ctctcccaga tgcggtgggg ccagagaggc
     4561 aagaactcag ccatgcagat gtggacaaca atgttaagcc gtttacgttt attgttgtat
     4621 cactagttac ctgaggttgt gtgtgagcag atgctaccgc ctcttctttt tgatagccct
     4681 gcttgtagga ggcactggaa tcctgccctc atcctctccc ctgcgggaag gcaggagcaa
     4741 aaaggtacca cattctcact caaaaactcc aaactctttt agaaaaataa agaaatattt
     4801 atagacctct ttcagctatt ttaataaagg atcctttgga aatttatccc cagctgatgc
     4861 tgttttgata ttaaagagag ttataaaatc agatgctgtc actgctgttg cggagcagac
     4921 acagaagctg tgtcattttt tttttgccat gagatgagat taaaagaaga cgattgttca
     4981 aagccatcac aaaacactaa gacggaccaa attcagagaa ccctcggact gtggggtttg
     5041 gtcagctttt tttgccctca cgcctgtctg tgagacaaca gcacgatgct aatgcccttc
     5101 cagaaccaac ctgtgttgca aagagaaagt ccaaaagact ctaaatgaaa ccctgaggat
     5161 gggaccgtgc tggagggctg tctgcagcct acacatcaca ggaggtccca ttgctggtgg
     5221 aaatgttgcc cttagctaat gtgtatgttg caaaggcctc cactccctga gttagaagcc
     5281 ttctgtccca aactcatttt cagaaccctc ggaaaactgg gtgtggggga ggtgctcaaa
     5341 gaggagtgct aaagtcagag tgaccctggc tcccaccctg aatctcggct gtacttagaa
     5401 ggcttctcct aagatctgag ccagggactt ctttccagag aacactgtgg cttccaactt
     5461 acttccttgt ttccagaaag ggcaagtgtt agttcaccat tgcccccaat gctccaaatc
     5521 ctagatgtac ccagtcagaa acctcaactc catttctcac catcgtcttt ctcatccatg
     5581 ctatccctgg aaggtatcca tgggtctgtg gaacttggta cggtcaacat taccacagca
     5641 tggccaccat atccccgtcg cttggtctgt tctcattttc ttcacaagat ctgcttggga
     5701 ttaaagatag gacctccccc aactcagaag taatcttcca acatcccgat tgtgatgtcc
     5761 agggacaaag gtccccttgg ataagatggc ctccatatcg aacgttgagt ctccagtttt
     5821 tatccccccc ccccaccaaa actgtggaag ctgaattggt gactaataat gcgtatgtgg
     5881 ccatctttgt tgccaatcca gtgcttgagg gaaaaacaac cgctccatgc agtgaccatc
     5941 atgtgagcca aaaggtttcc agaaaggaaa gaaaataagg aatgttccag aacttctaac
     6001 tctcatgcac ccagcccagg ctgcagaccg tcaacatcaa acaggccctg gaaaacctcc
     6061 ttttccacac ataaccctgg ctatgcattg agaagttttc cactatatac atttttattc
     6121 agaggagggt atttttatat tttgacacta gaaaaccacg acgagtcttc tgaggaatcc
     6181 tttctgggac aaacaaagcc tgtctcagcc tccaccaccc cagttgcaac acatccaccg
     6241 ggaaaccaca tctcttttca ccttgaaact ccacgttggg tcaacggacg acacaccaca
     6301 gatgcggctc agcagaattc accatggctt tggctttagt gtgacaggat ttggtgtgac
     6361 ctttgaacac agaaacctgg ttgtgtggaa gcccatggat ctgcaaacag attcgtccag
     6421 ttcacatcct acaatggttt aaaaagagaa aacgcacatg ctcacgcgtg cgtgcgtgca
     6481 cacacacagc acacacagac acacacagac acacgcacac acaaactgtt tctatgagag
     6541 attgatgaac tttgtctaaa attttaaaag aaagggacac attctgtaaa catgtctcta
     6601 aatacagaat tgtataacaa
//
