LOCUS       XM_039083509            7987 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cullin 9 (Cul9), transcript variant
            X3, mRNA.
ACCESSION   XM_039083509
VERSION     XM_039083509.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083509.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7987
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7987
                     /gene="Cul9"
                     /gene_synonym="Parc; RGD1562008"
                     /note="cullin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 20 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316228"
                     /db_xref="RGD:1562008"
     CDS             308..7732
                     /gene="Cul9"
                     /gene_synonym="Parc; RGD1562008"
                     /codon_start=1
                     /product="cullin-9 isoform X3"
                     /protein_id="XP_038939437.1"
                     /db_xref="GeneID:316228"
                     /db_xref="RGD:1562008"
                     /translation="MVGEQRAGDLMVPLGPRLQAYPEELIRQRPGHDGHPEYLIRWRV
                     LKCSEEGKVSLEEEKTEYLLMWLSAPEVYANCPMLLRERSVSKGPQYEPTGEVGSFPR
                     DPGGLDELAMAEMEDDVRALVRRAARQLAEGGASNLTVAVLHTIHVLSAYASIGPLTG
                     VFRETGALDLLMHMLCSPEPQIRRSAGKMLQALAAHDAGSRAHVLLSLSQHEGIEQHM
                     DFDSRYTLLELFAETTSTEEHCMALEGIHLPQLPGKLLFSLVKRYLCVTSLLDQLNNS
                     PESGAGDQSSPCLPKEKSRGQRELEFSMAVGNLISELVRSMGWARNLSEQGALPPRPS
                     RSIFQPCLSGPPLLLPTIVTTPRKPGRAFRGRSEFSSRSGYGEYVQQTVQPGMRVRIL
                     DDYEEISAGDEGEFQQSNNGVPPVQVFWQSTGRTYWVHWHMLEILGPEEATREPASAA
                     VEKGAGATALGTACPSWDRKPAHGLYSLPYLQPESQKSEEPGYLTQGEWWELLFFIKK
                     LDLCEQQPIFQNLHEKLDKAVGEKTLGEISVPIEMAEGVLQVLSNRFEGSNLCDLLNS
                     HIYTKYGRLPKEPGRLPPSRGHSCTSEPEEGSESAASFSEKEESPKAEAEPAGAKPES
                     PKAQSDSQLFNQLLVTEGMALAPETQAAATEMARTLRGPGPRSSLDQHVAAVLATVQI
                     SSLDTNLQLSGLGALSQAVEEVTERDHPLVRPDRSLREKLVKTLVDLLTNQVGEKMVV
                     VLALRLLYLLMTKHEWRPLFAREGGIYAVLICMQEYKTSVLVQQAGLAALKMLAIANS
                     SEVPTFVTGRDSIQPLFDTQMTREIFASIDSATRPGSESLLLSVPAAVVLMLNTEGCS
                     SAVRNGLLLLNLLLCNHHTLGDQIITQELRDTLFRHSGIAPGTEPMPTTRTILMMLLS
                     RYSEPWGSPERAALETPSTQGQDGSPESLIRSLVGDLSAELFLDLERVLCHEGSPQGA
                     MTPLLKRLQQETQPFLLLLRTLDAPGPNRALLLTVLRVMTRLLDYPETMVLPWHEVLE
                     PCLNCLNGPSSDSEVVQELTCFLHRLALMHKDYAVVLCCLGAKEALSKVLDKHSTQLL
                     LASELRHLVTECEKYAQLYTNLTSSLLAACIQMVLGQIEDHRRTYKPINIPFFDVFLR
                     HLCQGSSVEVKEDRCWEKVEVSSNPHRASKLTDRNPKTYWESNGSTGSHSITLHMHRG
                     VLIRQLTLLVASEDSSYMPARVVVFGGDSVGCISTELNTVNVVPSASRVTLLENLSRF
                     WPIIQIRIKRCQQGGIDTRVRGVEVLGPKPTFWPLFREQLCRRTCLFYTIRAQAWSRD
                     IAEDRQRLLQLYPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEALVSPLVQNITSP
                     DAGGVSSLGWLLDQYLEHREKARSRQGQAASFASQVRRLCHLLVHVEAPPGPSPEPSS
                     QPLSKSSKSQDGSPAPAPVRPSTTLRNITQCWLAVVQGQASRFLASAWRASDFVPRYC
                     DLYERLQRAGSELFGPRAAFTLALRSGFSGALLQQSFLTAAHISEQFARHIDQQIQGG
                     LLGGAAGVEMLGRLQRHLEPIMVLSGLELATTFEHFYQYYMADRLLSLGSSWLEGAVL
                     EQIGLCFPNRLPQLMLQSLRTSEELQRGFLLFQLQQLDRQLLEQGEQEEWKLERLEEE
                     DRGQETGRELLTEDPGPAISVLVLSPRCWPVSPLCYLHQPRKHLPTEFCDALDGFSSF
                     YSHSEELGTGSWRLRCIPGGRRGKAEATRQECQHYPVLDMGPHRRLQWTWLGRAELQF
                     GDQTLHVSTVQMWLLLNFNQTEEVSVEILLRNSGLSPELLHQALLPLTSDSGPLTLEE
                     AQDFPQGGVLRLREPRSQTHEEVLWLIPPQTYLSVEKDEGRTLEQKRNLLSCLLVRIL
                     KAHGEKGLHIDQLVCLVLEAWQKGPNPPGRLGRSAAVGVACSSTDVLSCILHLLGQGY
                     VERRDDRPQVLMYATPEPMGHCRGQADVPFCGNQSTETSKPSPEAVVALASLQLPAGR
                     TMSPQEVEGLMEQTVRQVQETLNLEPDVAQHLLAYSHWGTEQLLQSYSEDPEPLLLAA
                     GLRVPQPQEVPARPDQCPVCISPLGPNDDSPSLCCLHCCCKSCWNEYLTTRIEQNFVL
                     NCTCPIADCPAQPTGAFIRNIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRI
                     LCRQGLGSGTTCSKCGWASCFNCSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKH
                     LAKLISKRCPSCQAPIEKNEGCLHMTCARCNHGFCWRCLRSWKPSHKDYYNCSAMVSK
                     AARQEKRFQDYNERCTFHHQAREFAVNLRNQASAIHEVPPPKSFTFLQDACRALEQAR
                     KVLAYACVYSFYSQGTEYMDVVEQQTENLELHTNALQILLEETLLRCQDLASSLRLLR
                     ADCLSTGTELLRRIQERLLAILQHSTQAPGLLRTGSGRRGGRRGRGGGGGCT"
ORIGIN      
        1 caggaatggg ggtggggtgc cgtggtaggt ggaagaggaa ggtggaccgg gtgaagcgca
       61 ggatgcttca cacaccgaac tatctgggaa agactggttg cggattcccg cagctaatac
      121 gcatgctcca ctcacgcgcc gccgctttgc cacgctcgct gtgggccacg gtaggacccg
      181 tagtcgcctg ggccgtgcgt gcgcccggcg tgtgacccgg aaaggagctg tggaggaggc
      241 gggccgacct gcggacccgc tgctgggtga cagcgaaggt tcagccgggt ggtgagagga
      301 gatcaggatg gtaggagaac agcgagcagg ggaccttatg gtacccttgg ggcctcggct
      361 gcaggcatac cctgaagaac tcattcggca gagacctgga catgacggcc atcctgaata
      421 cctgatccgt tggcgtgtcc tcaagtgtag cgaagagggc aaagtgagct tagaggagga
      481 gaagacagag tacctcctca tgtggctgtc agccccagag gtctatgcca actgccccat
      541 gctacttcgg gaacgatcag tgtctaaagg cccacagtac gaacccaccg gagaggtggg
      601 gagcttccca cgagacccag gaggcctgga cgagttggca atggcagaga tggaggacga
      661 tgtgcgggcg ctggtgcgca gggctgccag gcagctggca gaaggtgggg cctccaacct
      721 gacggttgct gtgcttcata ccatccacgt gctcagtgcc tatgccagca ttgggcctct
      781 caccggggtc ttcagggaga caggagccct ggatctgcta atgcacatgc tgtgcagtcc
      841 ggagcctcag atccgtcgga gtgcaggcaa gatgctacag gctctggcag cccatgatgc
      901 tgggagccgg gctcacgtcc ttctgtcact gagccaacat gagggcatcg agcaacacat
      961 ggattttgac agccgctaca ctttactgga gctgttcgca gagaccacgt ccacggagga
     1021 gcactgcatg gccttggagg gcatccacct tcctcagctc cctgggaagc tgctcttctc
     1081 cctggtgaaa cgctacctat gtgtcacgtc cctgctggat cagctgaata acagcccaga
     1141 gtcaggagct ggagaccaga gctctccgtg tctcccaaag gagaagagtc ggggacagcg
     1201 ggagctggag ttcagtatgg cggtgggcaa cctcatttca gagctggtgc ggagcatggg
     1261 ctgggcgcgg aacctcagtg agcagggcgc cttgccgccc cggccttccc ggtccatctt
     1321 ccagccgtgc ctctcaggcc ctccactgct gctgcccacc atcgtcacta cgcccaggaa
     1381 gccaggacgg gccttccgcg gccgttctga attttccagc cgcagtggtt acggtgaata
     1441 tgttcagcag acggtgcagc ccggcatgcg cgttcgcatc ctggatgact acgaagagat
     1501 cagtgctggg gacgagggcg agttccagca gagcaacaat ggcgtgcctc ctgtgcaggt
     1561 cttctggcag tcaaccggcc gcacctactg ggtccactgg cacatgctag agatcctggg
     1621 gcctgaggaa gccactaggg agccagcatc agcagctgtg gagaagggag caggggcaac
     1681 tgccctgggc acagcgtgtc cctcctggga caggaagcca gcgcatggcc tctactcact
     1741 accgtatcta cagcccgagt cccagaagag cgaggagcca gggtacctga cccagggaga
     1801 gtggtgggag ctacttttct tcatcaagaa gttggacttg tgtgagcagc agccaatttt
     1861 ccagaatctg catgagaaac tggataaggc cgtgggagaa aagactctgg gagagatctc
     1921 tgtgcccata gagatggctg agggtgtgct gcaggttctc agtaaccgct ttgagggcag
     1981 caacctctgt gacctgctca actcccacat ctacaccaag tacggacggc tgcccaagga
     2041 accagggcgc ttaccgcctt cacggggtca ctcctgtacc tccgagccag aggaggggtc
     2101 ggagtcagcc gccagcttct cagagaagga agagtcccca aaggcagagg cggagcccgc
     2161 aggcgcaaag ccggagtccc ccaaagcaca gagcgactcc cagctgttca atcagcttct
     2221 ggtgactgag gggatggctc tggcccctga aacacaggcg gcagctactg aaatggccag
     2281 aaccttgcgg ggtcccggtc cacgcagctc cctggatcag catgtggcag ccgtcttagc
     2341 cactgtgcag atctccagcc tggatacaaa cctgcagctt tcagggctcg gtgccctctc
     2401 ccaggcggtg gaggaggtca ctgagcggga ccaccctctg gtccgtcctg acagatcctt
     2461 gagagagaag ctcgtgaaga ccctggtgga tttgctgacc aaccaggtgg gagagaagat
     2521 ggtggtggtg ctggccctgc gcctcctcta cctgctcatg accaagcatg aatggcgtcc
     2581 gctctttgcc agggagggtg gcatctacgc tgtgctgatc tgcatgcaag aatacaagac
     2641 atctgtcttg gtgcagcagg cgggactggc agcgctaaag atgctagcca ttgctaattc
     2701 ctccgaggtg cccacttttg tcaccggccg agattccatc cagcctctgt ttgataccca
     2761 gatgaccaga gagatctttg ccagcattga ctctgccaca cgtccaggct ctgagagctt
     2821 gctcctcagt gtacccgcag ccgtggtcct gatgctgaat accgaggggt gctcctctgc
     2881 agtgagaaat ggcctgctgc tactcaacct gcttctgtgt aaccaccaca ctctgggaga
     2941 ccagatcata acccaggagc tgagagacac cttgttcagg cactcaggga tagcgccggg
     3001 gacagaacca atgcccacca cacgcaccat cctcatgatg cttctcagtc gctactcaga
     3061 gccttgggga agtcctgagc gagcagcact ggagacccca agcacccagg gtcaggatgg
     3121 gtcccctgag tcactcatcc gatctctggt gggggacctg tcagcagaac tcttcctgga
     3181 cttggagcgt gttctgtgcc acgaaggcag ccctcaaggt gccatgacgc ccctcctcaa
     3241 gcgcctccag caggaaacac agcctttcct tctgttgctg cggactctag atgcccctgg
     3301 gcccaacaga gctctgctgc tcaccgtact cagggtcatg acacgactac tggattatcc
     3361 tgagacaatg gttctcccct ggcacgaggt cttggagccc tgcctcaact gcctgaatgg
     3421 gccaagcagt gactctgagg ttgtccagga actgacctgc ttcctgcacc gcctggctct
     3481 gatgcacaaa gactatgcgg tagtgctttg ctgcctggga gccaaagaag ccctctccaa
     3541 agtcctggac aagcactcca ctcagctcct gctggcctcg gagctccgcc acctggtgac
     3601 ggagtgcgag aagtacgccc agctctacac taacctcacc tcgagcctcc tggctgcctg
     3661 catccagatg gtgctgggcc agattgaaga ccacaggcga acctacaagc ccatcaacat
     3721 ccccttcttt gatgtgttcc tcaggcatct ctgccagggc tccagtgtgg aagtgaagga
     3781 agacaggtgc tgggagaagg tggaggtgtc ctccaatcca caccgggcca gcaagctgac
     3841 ggaccgcaat cccaagacct actgggagtc caacggcagc actggctccc actccatcac
     3901 cttgcacatg caccgtggtg ttcttattag gcagctgacc ttgcttgtgg ccagtgagga
     3961 ttcaagttac atgccagcca gggtggtggt gtttgggggt gacagtgttg gctgcatcag
     4021 caccgaactt aacacggtga atgtggtgcc ctctgccagc cgggtgacac tcctggagaa
     4081 cctcagccgc ttctggccca tcatccagat ccgaataaag cgctgtcagc agggcggcat
     4141 cgacactcga gttcggggtg tggaggtgct gggccccaag cccaccttct ggccattgtt
     4201 ccgggagcaa ctctgccgac ggacttgtct cttctacaca attcgggcac aagcatggag
     4261 ccgggacata gcagaggacc gccagcgcct ccttcagctc tatcctagac tgaacagagt
     4321 tttacgccat gaacagaatt ttgcagatcg cttcctccct gatgatgagg ctgcccaagc
     4381 actgggcaaa acctgctggg aggcgctggt cagccccctg gtgcagaaca tcacctctcc
     4441 cgatgcaggg ggtgtgagtt ccctgggatg gctgctggac cagtacctgg agcacaggga
     4501 gaaagcgagg agccgccagg gtcaggcagc atcctttgct tctcaagttc ggcgcttatg
     4561 ccacttgctg gtacacgtgg aagcccctcc tgggccttct cctgagccgt cctcgcagcc
     4621 cctcagcaag agcagtaaga gtcaggacgg aagcccggcc ccggcccccg tccgccccag
     4681 caccaccctt aggaacatca cccagtgctg gctggcggtg gtgcagggac aggccagcag
     4741 attcctggcc tcagcctgga gggcctcgga cttcgtgcct cgctactgtg atctctacga
     4801 gcgcttgcaa agagccggct cagagctgtt cgggccgcgg gcagccttca ccctggccct
     4861 gcgcagcggc ttctctgggg ctctgctgca gcagtccttc ctcactgctg ctcacataag
     4921 tgagcagttt gcgaggcaca ttgaccagca gatccagggt ggtttgcttg gtggagctgc
     4981 tggggtggaa atgctggggc ggcttcagcg gcacctggag cccatcatgg tcctttctgg
     5041 cctagagctg gccactactt ttgagcactt ctatcagtac tacatggctg acaggctcct
     5101 gagcttgggc tcgagctggc tggagggggc cgtgctggag cagattggcc tctgcttccc
     5161 caaccgcctc ccccagctga tgctgcagag cctgcgcacc tcagaggagc tgcagcgtgg
     5221 gttcctcctc ttccagctcc agcagctcga ccggcagctc ttggagcagg gggagcagga
     5281 ggaatggaag ctagagagac tggaggaaga agacagggga caggagactg gaagagaact
     5341 ccttacagaa gacccaggac cagccatttc tgtcctggtc ctgtcaccgc gctgctggcc
     5401 ggtctcccca ctgtgctacc tgcaccagcc caggaagcac cttcccacgg agttctgtga
     5461 tgcccttgac ggcttctcca gcttctacag ccacagtgag gagctgggga caggaagctg
     5521 gagattgaga tgcattccgg gtggccgcag aggaaaagca gaggccacca ggcaggagtg
     5581 tcagcactac ccagtcttgg acatgggacc acatcggcga cttcagtgga catggctggg
     5641 ccgggctgag ctgcagtttg gggaccagac cctgcatgtg tccactgtgc agatgtggct
     5701 gctgctgaat ttcaaccaga cagaggaggt gtcagtagag atcttgttga ggaactctgg
     5761 cctctcccct gagctcctgc accaggccct tctgccgctc acctcagaca gtggtccctt
     5821 aacactggag gaggctcagg actttccaca ggggggggtg ctgcggcttc gtgagcctag
     5881 gtcccagacc catgaagagg tcctgtggct gatacctccc cagacgtatc tcagtgtgga
     5941 aaaggatgag ggccgaacct tggagcagaa gaggaacctc ttgagctgcc ttctcgtacg
     6001 gatactcaaa gcccacgggg agaaaggcct gcacatcgat cagctggttt gtctggttct
     6061 ggaggcctgg cagaaggggc caaatccacc ggggcgcctg ggccgctctg ctgcagtggg
     6121 cgtggcctgt tccagcactg acgtcctctc ttgtatcctg catctcctgg gccagggcta
     6181 cgtggagcgg agagatgacc gacctcaggt cctgatgtat gccaccccag agcccatggg
     6241 gcactgccgg ggccaggcag atgtcccctt ttgtggcaac cagagcacgg agacctccaa
     6301 acctagccca gaagctgtgg tggccctggc ctctctgcag ctgccggcag gccggaccat
     6361 gagtccccag gaggtagaag gattgatgga gcagacagtg cggcaggtgc aggagacgct
     6421 gaacttggag cccgatgtgg ctcagcacct tctggcttat tcccactggg gcacggagca
     6481 gctgctacaa agctacagcg aggatcccga gccactgctg ctcgccgcag ggctgcgagt
     6541 gccccagccc caggaggtgc ccgctcgccc tgaccagtgc cccgtgtgca tcagccccct
     6601 agggcccaat gacgactcgc cctccctctg ctgcctgcac tgctgctgta agtcttgctg
     6661 gaacgagtac ctgacgactc ggatagagca gaactttgtg ctgaactgta cctgccccat
     6721 cgctgactgt cccgcccagc ccacgggagc cttcatccga aacattgtct cttccccaga
     6781 ggtcatctcc aagtatgaga aggcccttct gcgaggttat gtggagagct gctccaacct
     6841 gacatggtgc accaaccctc agggctgcga ccgtatcctg tgccgccagg gcctgggcag
     6901 tgggaccacc tgctctaagt gcggctgggc ctcttgcttc aactgtagtt ttcctgaggc
     6961 gcactatcct gccagctgtg gccacatgtc ccagtgggtt gacgatggcg gctactatga
     7021 cggcatgagc gtggaggccc agagcaagca cctggccaag ctcatctcca aacgctgtcc
     7081 cagctgtcag gcgcctatcg agaagaatga ggggtgtcta cacatgacct gtgcaagatg
     7141 taaccatggg ttctgctggc gctgcctcag gtcctggaag ccaagccaca aggactacta
     7201 caactgctct gccatggtaa gcaaagcagc tcgccaggag aagcggtttc aggactataa
     7261 cgagaggtgt accttccacc accaggcccg ggagtttgct gtcaacctgc ggaaccaggc
     7321 ctctgccatc catgaggtgc ctccgcccaa atccttcacc ttcctgcaag acgcctgccg
     7381 ggccctcgag caggctcgaa aggtgctggc ctacgcctgt gtctatagct tctacagcca
     7441 gggcacggag tacatggatg tggtggagca gcagacggag aacctggagc tgcacacgaa
     7501 tgccctgcag atcctcctcg aggagacctt gctgcgctgc caggacctgg cctcctccct
     7561 gcgcctcctg cgggctgact gcctcagcac aggcacggag ctgctccgga ggatccagga
     7621 gaggctgctg gccatcctac agcactcgac ccaggcccca gggctcctca ggactggaag
     7681 tggaagacga ggaggaagaa gaggaagagg aggaggagga ggatgtacct gagtggcagc
     7741 acgagtttga tgaggaacta gacaatgaca gcttctccta cgatgaggag tctgagaacc
     7801 tggaccgaga gaccttcttc tttggcgatg aagatgacga tgatgagtcc tatgactgag
     7861 ggggaggggc aggaaacacc tggagctgcc ggggcagcag ggccacgggg ctgtcatgtg
     7921 agaggggaac cccagtgtct gaagcacctt ctgtttactg aataaacctc ttttttcaca
     7981 cacttca
//
