LOCUS       XM_039083508            8060 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cullin 9 (Cul9), transcript variant
            X1, mRNA.
ACCESSION   XM_039083508
VERSION     XM_039083508.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083508.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8060
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8060
                     /gene="Cul9"
                     /gene_synonym="Parc; RGD1562008"
                     /note="cullin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 26 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316228"
                     /db_xref="RGD:1562008"
     CDS             307..7932
                     /gene="Cul9"
                     /gene_synonym="Parc; RGD1562008"
                     /codon_start=1
                     /product="cullin-9 isoform X1"
                     /protein_id="XP_038939436.1"
                     /db_xref="GeneID:316228"
                     /db_xref="RGD:1562008"
                     /translation="MVGEQRAGDLMVPLGPRLQAYPEELIRQRPGHDGHPEYLIRWRV
                     LKCSEEGKVSLEEEKTEYLLMWLSAPEVYANCPMLLRERSVSKGPQYEPTGEVGSFPR
                     DPGGLDELAMAEMEDDVRALVRRAARQLAEGGASNLTVAVLHTIHVLSAYASIGPLTG
                     VFRETGALDLLMHMLCSPEPQIRRSAGKMLQALAAHDAGSRAHVLLSLSQHEGIEQHM
                     DFDSRYTLLELFAETTSTEEHCMALEGIHLPQLPGKLLFSLVKRYLCVTSLLDQLNNS
                     PESGAGDQSSPCLPKEKSRGQRELEFSMAVGNLISELVRSMGWARNLSEQGALPPRPS
                     RSIFQPCLSGPPLLLPTIVTTPRKPGRAFRGRSEFSSRSGYGEYVQQTVQPGMRVRIL
                     DDYEEISAGDEGEFQQSNNGVPPVQVFWQSTGRTYWVHWHMLEILGPEEATREPASAA
                     VEKGAGATALGTACPSWDRKPAHGLYSLPYLQPESQKSEEPGYLTQGEWWELLFFIKK
                     LDLCEQQPIFQNLHEKLDKAVGEKTLGEISVPIEMAEGVLQVLSNRFEGSNLCDLLNS
                     HIYTKYGRLPKEPGRLPPSRGHSCTSEPEEGSESAASFSEKEESPKAEAEPAGAKPES
                     PKAQSDSQLFNQLLVTEGMALAPETQAAATEMARTLRGPGPRSSLDQHVAAVLATVQI
                     SSLDTNLQLSGLGALSQAVEEVTERDHPLVRPDRSLREKLVKTLVDLLTNQVGEKMVV
                     VLALRLLYLLMTKHEWRPLFAREGGIYAVLICMQEYKTSVLVQQAGLAALKMLAIANS
                     SEVPTFVTGRDSIQPLFDTQMTREIFASIDSATRPGSESLLLSVPAAVVLMLNTEGCS
                     SAVRNGLLLLNLLLCNHHTLGDQIITQELRDTLFRHSGIAPGTEPMPTTRTILMMLLS
                     RYSEPWGSPERAALETPSTQGQDGSPESLIRSLVGDLSAELFLDLERVLCHEGSPQGA
                     MTPLLKRLQQETQPFLLLLRTLDAPGPNRALLLTVLRVMTRLLDYPETMVLPWHEVLE
                     PCLNCLNGPSSDSEVVQELTCFLHRLALMHKDYAVVLCCLGAKEALSKVLDKHSTQLL
                     LASELRHLVTECEKYAQLYTNLTSSLLAACIQMVLGQIEDHRRTYKPINIPFFDVFLR
                     HLCQGSSVEVKEDRCWEKVEVSSNPHRASKLTDRNPKTYWESNGSTGSHSITLHMHRG
                     VLIRQLTLLVASEDSSYMPARVVVFGGDSVGCISTELNTVNVVPSASRVTLLENLSRF
                     WPIIQIRIKRCQQGGIDTRVRGVEVLGPKPTFWPLFREQLCRRTCLFYTIRAQAWSRD
                     IAEDRQRLLQLYPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEALVSPLVQNITSP
                     DAGGVSSLGWLLDQYLEHREKARSRQGQAASFASQVRRLCHLLVHVEAPPGPSPEPSS
                     QPLSKSSKSQDGSPAPAPVRPSTTLRNITQCWLAVVQGQASRFLASAWRASDFVPRYC
                     DLYERLQRAGSELFGPRAAFTLALRSGFSGALLQQSFLTAAHISEQFARHIDQQIQGG
                     LLGGAAGVEMLGRLQRHLEPIMVLSGLELATTFEHFYQYYMADRLLSLGSSWLEGAVL
                     EQIGLCFPNRLPQLMLQSLRTSEELQRGFLLFQLQQLDRQLLEQGEQEEWKLERLEEE
                     DRGQETGRELLTEDPGPAISVLVLSPRCWPVSPLCYLHQPRKHLPTEFCDALDGFSSF
                     YSHSEELGTGSWRLRCIPGGRRGKAEATRQECQHYPVLDMGPHRRLQWTWLGRAELQF
                     GDQTLHVSTVQMWLLLNFNQTEEVSVEILLRNSGLSPELLHQALLPLTSDSGPLTLEE
                     AQDFPQGGVLRLREPRSQTHEEVLWLIPPQTYLSVEKDEGRTLEQKRNLLSCLLVRIL
                     KAHGEKGLHIDQLVCLVLEAWQKGPNPPGRLGRSAAVGVACSSTDVLSCILHLLGQGY
                     VERRDDRPQVLMYATPEPMGHCRGQADVPFCGNQSTETSKPSPEAVVALASLQLPAGR
                     TMSPQEVEGLMEQTVRQVQETLNLEPDVAQHLLAYSHWGTEQLLQSYSEDPEPLLLAA
                     GLRVPQPQEVPARPDQCPVCISPLGPNDDSPSLCCLHCCCKSCWNEYLTTRIEQNFVL
                     NCTCPIADCPAQPTGAFIRNIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRI
                     LCRQGLGSGTTCSKCGWASCFNCSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKH
                     LAKLISKRCPSCQAPIEKNEGCLHMTCARCNHGFCWRCLRSWKPSHKDYYNCSAMVSK
                     AARQEKRFQDYNERCTFHHQAREFAVNLRNQASAIHEVPPPKSFTFLQDACRALEQAR
                     KVLAYACVYSFYSQGTEYMDVVEQQTENLELHTNALQILLEETLLRCQDLASSLRLLR
                     ADCLSTGTELLRRIQERLLAILQHSTQDFRVGLQSPSVETREVKGSNVPSDQPQGSSG
                     LEVEDEEEEEEEEEEEDVPEWQHEFDEELDNDSFSYDEESENLDRETFFFGDEDDDDE
                     SYD"
ORIGIN      
        1 aggaatgggg gtggggtgcc gtggtaggtg gaagaggaag gtggaccggg tgaagcgcag
       61 gatgcttcac acaccgaact atctgggaaa gactggttgc ggattcccgc agctaatacg
      121 catgctccac tcacgcgccg ccgctttgcc acgctcgctg tgggccacgg taggacccgt
      181 agtcgcctgg gccgtgcgtg cgcccggcgt gtgacccgga aaggagctgt ggaggaggcg
      241 ggccgacctg cggacccgct gctgggtgac agcgaaggtt cagccgggtg gtgagaggag
      301 atcaggatgg taggagaaca gcgagcaggg gaccttatgg tacccttggg gcctcggctg
      361 caggcatacc ctgaagaact cattcggcag agacctggac atgacggcca tcctgaatac
      421 ctgatccgtt ggcgtgtcct caagtgtagc gaagagggca aagtgagctt agaggaggag
      481 aagacagagt acctcctcat gtggctgtca gccccagagg tctatgccaa ctgccccatg
      541 ctacttcggg aacgatcagt gtctaaaggc ccacagtacg aacccaccgg agaggtgggg
      601 agcttcccac gagacccagg aggcctggac gagttggcaa tggcagagat ggaggacgat
      661 gtgcgggcgc tggtgcgcag ggctgccagg cagctggcag aaggtggggc ctccaacctg
      721 acggttgctg tgcttcatac catccacgtg ctcagtgcct atgccagcat tgggcctctc
      781 accggggtct tcagggagac aggagccctg gatctgctaa tgcacatgct gtgcagtccg
      841 gagcctcaga tccgtcggag tgcaggcaag atgctacagg ctctggcagc ccatgatgct
      901 gggagccggg ctcacgtcct tctgtcactg agccaacatg agggcatcga gcaacacatg
      961 gattttgaca gccgctacac tttactggag ctgttcgcag agaccacgtc cacggaggag
     1021 cactgcatgg ccttggaggg catccacctt cctcagctcc ctgggaagct gctcttctcc
     1081 ctggtgaaac gctacctatg tgtcacgtcc ctgctggatc agctgaataa cagcccagag
     1141 tcaggagctg gagaccagag ctctccgtgt ctcccaaagg agaagagtcg gggacagcgg
     1201 gagctggagt tcagtatggc ggtgggcaac ctcatttcag agctggtgcg gagcatgggc
     1261 tgggcgcgga acctcagtga gcagggcgcc ttgccgcccc ggccttcccg gtccatcttc
     1321 cagccgtgcc tctcaggccc tccactgctg ctgcccacca tcgtcactac gcccaggaag
     1381 ccaggacggg ccttccgcgg ccgttctgaa ttttccagcc gcagtggtta cggtgaatat
     1441 gttcagcaga cggtgcagcc cggcatgcgc gttcgcatcc tggatgacta cgaagagatc
     1501 agtgctgggg acgagggcga gttccagcag agcaacaatg gcgtgcctcc tgtgcaggtc
     1561 ttctggcagt caaccggccg cacctactgg gtccactggc acatgctaga gatcctgggg
     1621 cctgaggaag ccactaggga gccagcatca gcagctgtgg agaagggagc aggggcaact
     1681 gccctgggca cagcgtgtcc ctcctgggac aggaagccag cgcatggcct ctactcacta
     1741 ccgtatctac agcccgagtc ccagaagagc gaggagccag ggtacctgac ccagggagag
     1801 tggtgggagc tacttttctt catcaagaag ttggacttgt gtgagcagca gccaattttc
     1861 cagaatctgc atgagaaact ggataaggcc gtgggagaaa agactctggg agagatctct
     1921 gtgcccatag agatggctga gggtgtgctg caggttctca gtaaccgctt tgagggcagc
     1981 aacctctgtg acctgctcaa ctcccacatc tacaccaagt acggacggct gcccaaggaa
     2041 ccagggcgct taccgccttc acggggtcac tcctgtacct ccgagccaga ggaggggtcg
     2101 gagtcagccg ccagcttctc agagaaggaa gagtccccaa aggcagaggc ggagcccgca
     2161 ggcgcaaagc cggagtcccc caaagcacag agcgactccc agctgttcaa tcagcttctg
     2221 gtgactgagg ggatggctct ggcccctgaa acacaggcgg cagctactga aatggccaga
     2281 accttgcggg gtcccggtcc acgcagctcc ctggatcagc atgtggcagc cgtcttagcc
     2341 actgtgcaga tctccagcct ggatacaaac ctgcagcttt cagggctcgg tgccctctcc
     2401 caggcggtgg aggaggtcac tgagcgggac caccctctgg tccgtcctga cagatccttg
     2461 agagagaagc tcgtgaagac cctggtggat ttgctgacca accaggtggg agagaagatg
     2521 gtggtggtgc tggccctgcg cctcctctac ctgctcatga ccaagcatga atggcgtccg
     2581 ctctttgcca gggagggtgg catctacgct gtgctgatct gcatgcaaga atacaagaca
     2641 tctgtcttgg tgcagcaggc gggactggca gcgctaaaga tgctagccat tgctaattcc
     2701 tccgaggtgc ccacttttgt caccggccga gattccatcc agcctctgtt tgatacccag
     2761 atgaccagag agatctttgc cagcattgac tctgccacac gtccaggctc tgagagcttg
     2821 ctcctcagtg tacccgcagc cgtggtcctg atgctgaata ccgaggggtg ctcctctgca
     2881 gtgagaaatg gcctgctgct actcaacctg cttctgtgta accaccacac tctgggagac
     2941 cagatcataa cccaggagct gagagacacc ttgttcaggc actcagggat agcgccgggg
     3001 acagaaccaa tgcccaccac acgcaccatc ctcatgatgc ttctcagtcg ctactcagag
     3061 ccttggggaa gtcctgagcg agcagcactg gagaccccaa gcacccaggg tcaggatggg
     3121 tcccctgagt cactcatccg atctctggtg ggggacctgt cagcagaact cttcctggac
     3181 ttggagcgtg ttctgtgcca cgaaggcagc cctcaaggtg ccatgacgcc cctcctcaag
     3241 cgcctccagc aggaaacaca gcctttcctt ctgttgctgc ggactctaga tgcccctggg
     3301 cccaacagag ctctgctgct caccgtactc agggtcatga cacgactact ggattatcct
     3361 gagacaatgg ttctcccctg gcacgaggtc ttggagccct gcctcaactg cctgaatggg
     3421 ccaagcagtg actctgaggt tgtccaggaa ctgacctgct tcctgcaccg cctggctctg
     3481 atgcacaaag actatgcggt agtgctttgc tgcctgggag ccaaagaagc cctctccaaa
     3541 gtcctggaca agcactccac tcagctcctg ctggcctcgg agctccgcca cctggtgacg
     3601 gagtgcgaga agtacgccca gctctacact aacctcacct cgagcctcct ggctgcctgc
     3661 atccagatgg tgctgggcca gattgaagac cacaggcgaa cctacaagcc catcaacatc
     3721 cccttctttg atgtgttcct caggcatctc tgccagggct ccagtgtgga agtgaaggaa
     3781 gacaggtgct gggagaaggt ggaggtgtcc tccaatccac accgggccag caagctgacg
     3841 gaccgcaatc ccaagaccta ctgggagtcc aacggcagca ctggctccca ctccatcacc
     3901 ttgcacatgc accgtggtgt tcttattagg cagctgacct tgcttgtggc cagtgaggat
     3961 tcaagttaca tgccagccag ggtggtggtg tttgggggtg acagtgttgg ctgcatcagc
     4021 accgaactta acacggtgaa tgtggtgccc tctgccagcc gggtgacact cctggagaac
     4081 ctcagccgct tctggcccat catccagatc cgaataaagc gctgtcagca gggcggcatc
     4141 gacactcgag ttcggggtgt ggaggtgctg ggccccaagc ccaccttctg gccattgttc
     4201 cgggagcaac tctgccgacg gacttgtctc ttctacacaa ttcgggcaca agcatggagc
     4261 cgggacatag cagaggaccg ccagcgcctc cttcagctct atcctagact gaacagagtt
     4321 ttacgccatg aacagaattt tgcagatcgc ttcctccctg atgatgaggc tgcccaagca
     4381 ctgggcaaaa cctgctggga ggcgctggtc agccccctgg tgcagaacat cacctctccc
     4441 gatgcagggg gtgtgagttc cctgggatgg ctgctggacc agtacctgga gcacagggag
     4501 aaagcgagga gccgccaggg tcaggcagca tcctttgctt ctcaagttcg gcgcttatgc
     4561 cacttgctgg tacacgtgga agcccctcct gggccttctc ctgagccgtc ctcgcagccc
     4621 ctcagcaaga gcagtaagag tcaggacgga agcccggccc cggcccccgt ccgccccagc
     4681 accaccctta ggaacatcac ccagtgctgg ctggcggtgg tgcagggaca ggccagcaga
     4741 ttcctggcct cagcctggag ggcctcggac ttcgtgcctc gctactgtga tctctacgag
     4801 cgcttgcaaa gagccggctc agagctgttc gggccgcggg cagccttcac cctggccctg
     4861 cgcagcggct tctctggggc tctgctgcag cagtccttcc tcactgctgc tcacataagt
     4921 gagcagtttg cgaggcacat tgaccagcag atccagggtg gtttgcttgg tggagctgct
     4981 ggggtggaaa tgctggggcg gcttcagcgg cacctggagc ccatcatggt cctttctggc
     5041 ctagagctgg ccactacttt tgagcacttc tatcagtact acatggctga caggctcctg
     5101 agcttgggct cgagctggct ggagggggcc gtgctggagc agattggcct ctgcttcccc
     5161 aaccgcctcc cccagctgat gctgcagagc ctgcgcacct cagaggagct gcagcgtggg
     5221 ttcctcctct tccagctcca gcagctcgac cggcagctct tggagcaggg ggagcaggag
     5281 gaatggaagc tagagagact ggaggaagaa gacaggggac aggagactgg aagagaactc
     5341 cttacagaag acccaggacc agccatttct gtcctggtcc tgtcaccgcg ctgctggccg
     5401 gtctccccac tgtgctacct gcaccagccc aggaagcacc ttcccacgga gttctgtgat
     5461 gcccttgacg gcttctccag cttctacagc cacagtgagg agctggggac aggaagctgg
     5521 agattgagat gcattccggg tggccgcaga ggaaaagcag aggccaccag gcaggagtgt
     5581 cagcactacc cagtcttgga catgggacca catcggcgac ttcagtggac atggctgggc
     5641 cgggctgagc tgcagtttgg ggaccagacc ctgcatgtgt ccactgtgca gatgtggctg
     5701 ctgctgaatt tcaaccagac agaggaggtg tcagtagaga tcttgttgag gaactctggc
     5761 ctctcccctg agctcctgca ccaggccctt ctgccgctca cctcagacag tggtccctta
     5821 acactggagg aggctcagga ctttccacag gggggggtgc tgcggcttcg tgagcctagg
     5881 tcccagaccc atgaagaggt cctgtggctg atacctcccc agacgtatct cagtgtggaa
     5941 aaggatgagg gccgaacctt ggagcagaag aggaacctct tgagctgcct tctcgtacgg
     6001 atactcaaag cccacgggga gaaaggcctg cacatcgatc agctggtttg tctggttctg
     6061 gaggcctggc agaaggggcc aaatccaccg gggcgcctgg gccgctctgc tgcagtgggc
     6121 gtggcctgtt ccagcactga cgtcctctct tgtatcctgc atctcctggg ccagggctac
     6181 gtggagcgga gagatgaccg acctcaggtc ctgatgtatg ccaccccaga gcccatgggg
     6241 cactgccggg gccaggcaga tgtccccttt tgtggcaacc agagcacgga gacctccaaa
     6301 cctagcccag aagctgtggt ggccctggcc tctctgcagc tgccggcagg ccggaccatg
     6361 agtccccagg aggtagaagg attgatggag cagacagtgc ggcaggtgca ggagacgctg
     6421 aacttggagc ccgatgtggc tcagcacctt ctggcttatt cccactgggg cacggagcag
     6481 ctgctacaaa gctacagcga ggatcccgag ccactgctgc tcgccgcagg gctgcgagtg
     6541 ccccagcccc aggaggtgcc cgctcgccct gaccagtgcc ccgtgtgcat cagcccccta
     6601 gggcccaatg acgactcgcc ctccctctgc tgcctgcact gctgctgtaa gtcttgctgg
     6661 aacgagtacc tgacgactcg gatagagcag aactttgtgc tgaactgtac ctgccccatc
     6721 gctgactgtc ccgcccagcc cacgggagcc ttcatccgaa acattgtctc ttccccagag
     6781 gtcatctcca agtatgagaa ggcccttctg cgaggttatg tggagagctg ctccaacctg
     6841 acatggtgca ccaaccctca gggctgcgac cgtatcctgt gccgccaggg cctgggcagt
     6901 gggaccacct gctctaagtg cggctgggcc tcttgcttca actgtagttt tcctgaggcg
     6961 cactatcctg ccagctgtgg ccacatgtcc cagtgggttg acgatggcgg ctactatgac
     7021 ggcatgagcg tggaggccca gagcaagcac ctggccaagc tcatctccaa acgctgtccc
     7081 agctgtcagg cgcctatcga gaagaatgag gggtgtctac acatgacctg tgcaagatgt
     7141 aaccatgggt tctgctggcg ctgcctcagg tcctggaagc caagccacaa ggactactac
     7201 aactgctctg ccatggtaag caaagcagct cgccaggaga agcggtttca ggactataac
     7261 gagaggtgta ccttccacca ccaggcccgg gagtttgctg tcaacctgcg gaaccaggcc
     7321 tctgccatcc atgaggtgcc tccgcccaaa tccttcacct tcctgcaaga cgcctgccgg
     7381 gccctcgagc aggctcgaaa ggtgctggcc tacgcctgtg tctatagctt ctacagccag
     7441 ggcacggagt acatggatgt ggtggagcag cagacggaga acctggagct gcacacgaat
     7501 gccctgcaga tcctcctcga ggagaccttg ctgcgctgcc aggacctggc ctcctccctg
     7561 cgcctcctgc gggctgactg cctcagcaca ggcacggagc tgctccggag gatccaggag
     7621 aggctgctgg ccatcctaca gcactcgacc caggacttcc gggtcgggct gcagagtccc
     7681 tcagtagaga cccgggaggt gaaagggtcc aacgtgccca gtgaccagcc ccagggctcc
     7741 tcaggactgg aagtggaaga cgaggaggaa gaagaggaag aggaggagga ggaggatgta
     7801 cctgagtggc agcacgagtt tgatgaggaa ctagacaatg acagcttctc ctacgatgag
     7861 gagtctgaga acctggaccg agagaccttc ttctttggcg atgaagatga cgatgatgag
     7921 tcctatgact gagggggagg ggcaggaaac acctggagct gccggggcag cagggccacg
     7981 gggctgtcat gtgagagggg aaccccagtg tctgaagcac cttctgttta ctgaataaac
     8041 ctcttttttc acacacttca
//
