LOCUS       XM_039101061            7172 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cortexin domain containing 1 (Ctxnd1),
            mRNA.
ACCESSION   XM_039101061
VERSION     XM_039101061.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7172
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7172
                     /gene="Ctxnd1"
                     /note="cortexin domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 57 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102553298"
                     /db_xref="RGD:7557291"
     CDS             446..625
                     /gene="Ctxnd1"
                     /codon_start=1
                     /product="cortexin domain-containing 1 protein"
                     /protein_id="XP_038956989.1"
                     /db_xref="GeneID:102553298"
                     /db_xref="RGD:7557291"
                     /translation="MEEPTPEPVYVDVDKGLTLACFVFLCLFLVVMIIRCAKVIMDPY
                     SAIPTSTWEEQHLDD"
ORIGIN      
        1 cctcggctct gctcacagcc gctctcggcg gctgcccggg gctcaccgcg ccgccgccgg
       61 gcgctgactc agccgcagtc cggctgcttc gccgagccgg acctggggag cgcgcgcacg
      121 gagaccgtgc ccggtgcccg gtgcccggcg cctggagcca tccgggaagc accgcagcgc
      181 ttgaactagc ttccagagct gggggctgga ccgattaggt cccagagcgc atcggactcg
      241 gctgaccagc ctcctacagc tctgctctct gagaagtcat gctgactcat tggctcaagc
      301 tgtgatgctc agctgtctgt ccatcttgtc tcctggaaca gctcaatcca gggtcttcct
      361 gaagtggtga tcactccagc tggcaggggt agaaaatggt accagtcagg tcagagctct
      421 gggatcccac agtcactgct gcaggatgga ggaacctact cctgagcctg tctatgtgga
      481 tgtggacaag gggctgacct tggcttgctt cgttttcctc tgcctcttcc tcgtagtcat
      541 gatcatccgc tgtgccaaag tcatcatgga cccctacagt gccatcccca cgtcaacctg
      601 ggaggagcag cacctggatg actgaggcac aggacaggtc tcagtatccc caacatgcct
      661 ttgtacactc tggccaacat cctgcgagca cttggagact gggagtggct atgatcaccc
      721 aaaactggag aaggctcacc tttgccttac tggctctcac atgaccacca gaggggaatg
      781 ccatcgtgca ggagccaagg cagtctggag gatcctgggg agaggaatgc tgagccatga
      841 ctcagtcgag tggagatgat gttgggactc cactgggaga cagcagggtg atagttccct
      901 gcccaggctc ctgggcacct ttgaaaactg aaccaaaacc agatactctg gtctacaaat
      961 agtggtcagg aggagactga ccttcaacta cacagcatgg agaggttgct gagagcccag
     1021 taccctctac agactaacag tgaggggcag gaaggatgaa gacttcaggg ggcttctcct
     1081 ccaaattctc acaaggcaca cagctacttt caaactttta ttttcaaaag aaaaaaactc
     1141 cataaaaaca caaactaaga tacagaaggg atatattttt cctgttaaaa atgagatgtg
     1201 cattttagac acttgggaaa atataaataa atagaaggga agggaggcga atagcactta
     1261 aaaatccaac ctccccaaag ccatcatttt gatacatttc ttcaagtctt ttttacagga
     1321 ttttttttag taattcacac catatgcatg atgctgcatt gatttgtatg atagcttaaa
     1381 tatcttctgc ctcacaagat accatggctg tttttagtga ctgagagtaa actggctagg
     1441 ccatggctga atatagtcct tttctttaat ctgtctaact ttctacaatg tactcatgca
     1501 aatcacagta accttcagaa gctctgcatc ccaggagctc caggaaagat ctgggttcta
     1561 gtcctcctta gctattcaaa ggctgtaaaa gtcacctcac ctcttggtgc ctccatttcc
     1621 tcattgtaag atgggaagga gaaatgtctg tctatcagtc tgtctgtctg tctgtgagac
     1681 taggttgtct cttctgttgt ctttccttca tcttcttctc tcacacactg tcacctgcat
     1741 ctttgacctt gctgccagga ttctaggtca gagcccacaa ccatccccac cctacttcaa
     1801 ctcctgtttc cttattatat gactcctaaa taagttggca cctgtgagct tcaattttgt
     1861 catctataaa atggcggtgt aacatctacc tcacaaggtt gtcatggaga taaaatggga
     1921 gagcatgagc aaacaggggt gtcctttcct gaatctctca ccctaggaag agaaccctcc
     1981 ctgccttcta agagccagtg ctcccagcca gtaccatgtt cacagtggcc agcagagcat
     2041 tcacagtgac ctacacctga caccaaggca ccaaggccta tgggatcatt gtcactattg
     2101 tcatttattt tcacatatgt gaggtgtacc tattgtgttc ttctagggta ggacctgctg
     2161 ccctatcaaa agagacctgt gctgtggatc ttagatctcc tccatcaccc acagtcaagc
     2221 catgcgttcc catgtatctt aggctacctg ggaaatgggt tccaaagtat tctcacacta
     2281 cctgacctct gaaagtagtg gatactctat caaggtggtt tcaggatatg ttgtgtgagt
     2341 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt ctgtgtctgt gtgtctgtgt
     2401 ctgtgtgtct gtgtgtctgt ctctgtttct gtctctctct cacaaacaca cacacacaca
     2461 cacacacaca cacacacaca cacacacaca cacacactgt cggatgcaca aaagaacaca
     2521 tggcataggc tccaaacctg gcactgaggt atcacttcca gcccaccctt cctcagatac
     2581 ctacctcaga gatggcatgc tcttctgtgg gagcctgttt agatgggttt acagtcaatg
     2641 ggaggggggc actgttccta gctgttaatg acagaacagc aggaagaagg aaagatctaa
     2701 agagctctga agacttcctg tggaggtctt ttgaagctct caggagggaa aattggatgc
     2761 cccaggctgt gcttctctga gagcctgctg aagggcaaac cacacctgca ggagccctct
     2821 tcccctcccc agacctatag aatcgtactg ggcatctggg gccagttagc tatgctagcc
     2881 aaacccctgg atggcagtac atccctgttt gagaaaccct ccccaggacc tctggcctca
     2941 gacaatgtcc cacacctaca gactttaata ttttctaccc aatctctttg tgttggtttc
     3001 atggcaaggg gaaataacat ctgagaaagg acacgatttc aagcctcttc ccccagagtc
     3061 aagcttctaa caaggcaaca aagcagtggt ttatatttgt actcacaccc tcccttctca
     3121 tttgcatcct cttgcaagct atacttgtcc ataagtacca ttttttgtgt accacaagca
     3181 cctttcccca ttgttgcttc ttcttgaatc tccctttctc tctctctctc tctctctctc
     3241 tctctctctc tctctcacac acacacacac acacacacac acacacacac acacacacac
     3301 agagagagag agagagacag agagagagag agagagagag agagagacag agagagagag
     3361 agagagagag agagagcaag agagatgcac atgtcctggt gtattagtgt gagcatgcac
     3421 ttgccacagt gcgtgtttgg aggtcagatg acaatcttga gtgttggtcc tcaccttcct
     3481 tgtttgagac agagtctcct ttttgttgct caccacgtta cttcccaggc tagcttgccc
     3541 acaagctccc aggaattctc ctctctctgg ctgccatctc ccacaggagc actagaatca
     3601 cagaggtgcc attctgcacc cactcacttt cacataagtt ctgggagtga aaactcaggt
     3661 cctcacattt gcacagcaag caattgcctg ctgaaatgat gtcccagccc cctcccagcc
     3721 ctttatcatt tttaaggttt gtgttttttt aaaaaaggat cccctcatac acatgcatga
     3781 cactgcagac cactatacca aatacttttt atatgttttt attttcctgt tatatatgtg
     3841 ctgagaagaa atatatagaa gtggctgtgc tgaccctggg ccttgctcag gagaggagaa
     3901 aaggcaggtt tatagcacat cccttctcag agatacacaa gaaggaaagt ggggtcccca
     3961 cctctgtcac ttgatcatgt ggaggtgcaa aagtggaaga atcccaagtt tttcttctct
     4021 catgttttcc attctgaagg atggaggacg tagtccttta caaccagagc accctcacaa
     4081 gtttctgtta actaagagaa agcctgcagt tgtgaataga gagaaaacac tgcagcaaca
     4141 tattagtgct aaaggcttga agttggcaga gaagaaatgg agagatgctg gagaaaagga
     4201 tagctataga gtcagccaaa ggcagggaag aaggcaaact gtggcagaga gtaggtgata
     4261 gtctccagac aaaggcatct agtggctggg atcaagctgc taccaatgat gcactgtgtg
     4321 gaagcccctc cgtattacct ccagcaaggt ggatgcacag tcctttcatg gctgtgtaat
     4381 tgcagcagtg gggccatctg catgatggcc acagaaagga cccagttgtc ccagagacaa
     4441 atgggtgata aaaatattca gaaacaggaa aggcaactca tagacatcag aggaacatat
     4501 gggtatgatc aggggctgat tgacacaagt ggtaggaccc ggttgccccg gtgtggccta
     4561 tcgtggctat cacaaccatt ttatttttcc aatttaatat ccaaatatcc acatgctttg
     4621 ttttgttttg gtggagtgat cttggttctg ggatatggaa ctcacagccc tgtacatatg
     4681 agaccagcac ttgtcactga tatttgcccc taaccccaca tatcttgctg aaacgaaaac
     4741 aagcatccct ccagccaata aagtttccca ggatcccaga ggtttccaaa aggtccatct
     4801 tactttaaag caccaaatgg aaataattgc aaagcctagt ttctacaaaa gtgggttgcc
     4861 tgtcccgtgg ccttgctgtt gaggactggt cccaccacac aggatggata ttatccataa
     4921 tagttcatgg ctgatgccat gtagaacgga tcttatccat aacagtctct agctgatggt
     4981 cctggttgct aagaaatgcc cacattgagt tctccacatc agttcaagca cagacatggg
     5041 ttgtctctgt ccagaagaca gacaacctcg atcacactca cttttgctgg cctgtgctga
     5101 ttccatatat ccttgacatc tactaagacc ttccctcctt tcccctacag aaggctgtca
     5161 ctacctggca gtggctagca agagacagag ggcatgcttg aaatattaat aaagaaagta
     5221 cgtttacaga ggttgggtgt tcagggaaac agaatggcag ataccaagga cagtgagaca
     5281 gagttctcta ggcctgaagg ataacagatc ccagcagagg tcgttgcatg atggaatcag
     5341 gcaagaggag ctgtgccaca ggtatatcta atattcttgc ctatggctag tctgtagctc
     5401 agtggtaggg cacctgccta agatgcttga gatcctgagt taaatcccca gaaccagaag
     5461 aaaagtcctt gcacaatttc agagcagtag ggagttggaa agaccctttg cctcctttct
     5521 aggtctccta ctgaccaaaa gtaatagata ctaaatggtg ggactgctga gtaatagggt
     5581 ctttgtatgt cagcacactg gagcaactga aaaatgagca gcacagccca ccccaagcga
     5641 cacccagcaa ccatcacaaa ctcccagcat tcatcacgaa ctcctagcaa ctatcacgaa
     5701 ctcccagcat ctatcacaaa ccttgctaag acagggaagc aaacatggat cctaaggaaa
     5761 cagtctcgtg gacaccatat tgccccagat aatgtcaatg ttgttccatt ctgagtaaga
     5821 cctgacacta gaatgtagcc agtgtaaggc agagaggcta gcacagcttt ctctgtagca
     5881 gttgcaaggc ctagtgtgaa tagcagtctt ggtctttccc ctcctgcccc acattccctg
     5941 aatagtcttc agatacggag gtgtcttacc tcatccacag aggagacaag ctcctgtcct
     6001 gtttttattt attgggttaa caattgccca aagaatttag gaagaagcct tgcagatcta
     6061 gctgaaggca ctttagaact cccaggagac ataggagctc atggaactgt agtcccaagt
     6121 cgaagagcat cagtgtctct atagaattga accctagact ttcagaatgt accaagatgt
     6181 accaagtgtc ccagtgaacc cttgggctcc aaaatgagtc tcctttgttc ctgttgggta
     6241 gcagtcattc catagctctt gaggtatgaa agaaattgcc tgacaatgca gcaatctcct
     6301 cttctgcaca ctggttcacc caatacgccc caaatatcat aaagccatct tccaatgtat
     6361 cagactccca ccacgcttgc tagtggaagc attcatcctg cttcccaatc tagaacattt
     6421 gtaacagtta taacaatata agagttataa gggtgggtca ctctattcaa tgagtcacac
     6481 agtattggca ggaaaaacat gctaacacag ccttggtaga aacaacagag ttcctcacaa
     6541 acttaaaact agacatgcca tatgctctca cattaggggt atatctaaag gaaataaaat
     6601 tagcatttca aagacctcca ctcccatgtt gatcacagca ccatacacac tagccaaaag
     6661 ctggactgct tataaatatt tatcaatgaa tgagccaatg aagaaaatgt ggtacctaag
     6721 cacagtgaga tctaattcat ctatagaaag tataaaatct tgtcattggg acatggatgg
     6781 aattgaaggt cattttgtga aatgagccaa gcacagaaaa acaagtaccc gtggtgtcac
     6841 atacagaatg ttaaataggt tgctttccca gaagctgaga gaagaatggt tagcagagac
     6901 tctggggaag ctgggaggag gaaacctgat cgctgagtcc tgtgttacag ttaaagaaat
     6961 aagttctgtt ttgttactat gctgcagatt caaaggcact aggaaaaagg attctgattg
     7021 cttctatcac aaagaagtaa tgtttgaggt gatatatagg gccacctgga gctgattctg
     7081 aacaatatac acacttaaca aaacatcata tgctataaat atgtacaatc catgtattga
     7141 ttttaaaaaa taaataaaat agaaaagagg ta
//
