LOCUS       NM_001106251            2245 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus cytosolic thiouridylase subunit 1 (Ctu1), mRNA.
ACCESSION   NM_001106251 XM_001080387 XM_218640
VERSION     NM_001106251.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473979.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001080387.1, XM_218640.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161898.1, DY311478.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..2245
                     /gene="Ctu1"
                     /gene_synonym="Atpbd3; RGD1308740"
                     /note="cytosolic thiouridylase subunit 1"
                     /db_xref="GeneID:292847"
                     /db_xref="RGD:1308740"
     exon            1..58
                     /gene="Ctu1"
                     /gene_synonym="Atpbd3; RGD1308740"
                     /inference="alignment:Splign:2.1.0"
     exon            59..602
                     /gene="Ctu1"
                     /gene_synonym="Atpbd3; RGD1308740"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..1243
                     /gene="Ctu1"
                     /gene_synonym="Atpbd3; RGD1308740"
                     /note="ATP binding domain 3; cytosolic thiouridylase
                     subunit 1 homolog; cytoplasmic tRNA adenylyltransferase 1;
                     ATP-binding domain-containing protein 3"
                     /codon_start=1
                     /product="cytoplasmic tRNA 2-thiolation protein 1"
                     /protein_id="NP_001099721.1"
                     /db_xref="GeneID:292847"
                     /db_xref="RGD:1308740"
                     /translation="MPAPTCFSCHKARAALRRPRSGQALCGPCFCAAFEAEVLRTVLA
                     GHLLPQGAVVAVGASGGKDSTVLAHVLRELAPRLGITLHLVAVDEGIGGYRDAALEAV
                     RSQAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGAR
                     LVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGVLGSTGEGCALPRCRPLQFASQ
                     KEVVLYAHFRHLRYFSEECVYAPEAFRGHARDLLKLLEAARPSAVLDLVHSAERLALA
                     PAAKPPPPGTCSRCGALASNKLCQACALLDGLNRGLPRLAIGKGRRVLQVEPPPLGNP
                     SRVTSDPVALPEPCTCKQSKDESNPCGNGGDRAGATCVSKSDLSPVAE"
     exon            603..2245
                     /gene="Ctu1"
                     /gene_synonym="Atpbd3; RGD1308740"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aattcttccg ctccaggctt ccgcgtggca ggcagagtgc agagcccatt ccacacagtg
       61 tagacatccc aggcgaccca ctttctcttc caagatgccg gccccgacgt gcttctcctg
      121 tcacaaggcc cgtgctgccc tccgccgccc acgctctggg caggctttgt gtggcccctg
      181 cttctgtgct gcctttgagg ctgaggtgct gcgtacggtg cttgctgggc acctgctgcc
      241 gcagggcgct gtagtggctg tgggcgcctc tggcggcaag gactccacgg tgctggcaca
      301 cgtgctgcgt gagcttgcac cacgcttggg catcacactg cacctggtgg ccgtggatga
      361 gggcataggc ggctaccgcg acgctgcgct ggaggcggtg cgcagtcagg cagcgcgctg
      421 ggagctgccg ctcaccatcg tggcctatga agatctcttc ggaggctgga caatggacgc
      481 tgtggcccgc agcaccgcag gctccggccg cagtcgctcc tgctgcacct tctgcggggt
      541 gctgcggagg cgcgcgctgg aggagggtgc ccgccttgtg ggagctactc acattgtgac
      601 aggtcacaat gctgacgaca tggctgagac ggtgctcatg aacttcctgc gtggtgatgc
      661 tgggaggctg gcgaggggtg gagtgctggg ttccacaggc gaaggatgcg cacttccccg
      721 gtgccggcct ctgcagtttg cctcgcagaa ggaggtggtg ctgtacgcac atttccgcca
      781 cctccgctac ttctccgagg agtgtgtgta tgcccctgag gctttccgtg gccatgctcg
      841 ggacctgctt aagctcctgg aggcagccag accatcggcc gtgctggacc tcgtgcactc
      901 ggcagagcgc ctagctctgg ctccggcagc aaagccccct cctccaggca cctgctcccg
      961 ctgcggagcg ctggccagca acaagctctg ccaggcctgt gcactcctgg atggcctcaa
     1021 ccgaggcctg ccgcgcctgg ccatcggcaa gggccgccgt gtgttgcaag ttgagccgcc
     1081 acctctaggg aacccaagcc gggtcaccag tgaccctgtg gccctaccag aaccctgcac
     1141 ctgcaagcaa tccaaagatg aatccaaccc atgcggaaat ggaggggacc gggcaggagc
     1201 cacctgtgta tcgaagagtg acctgagccc cgtggcggag tgacctgagc tctgcactct
     1261 ccattgccct gtgcccgggg aagtgattgt accccagtgc attgcaactg tgaagtgatt
     1321 tcccttcagt gcactgcact ctaggactga ccggtttccc tgtggagtaa ccgtaccccg
     1381 tggagggatg tgtcctgtac agcaacccga accttgaaga agtgtaggga gccccaggca
     1441 gagctaccag gtctaagaag ggaccaacaa ccgtgccttc ctgtacacct ctgtgggctc
     1501 aggcagccct ggccctccct ttctgtttcc ccaagtcatg aggaatagga atattcacag
     1561 tcatcactag atacctttca tccagacaca gctcttgcac ttacggcagt ctgagacaat
     1621 ttattctgaa ctgattggga ccttcggtgg cctggcgcat gagctgaggt tgccctagaa
     1681 atactgcctc agaagcagtt agacaaacac acccccagaa caacagaaag tcatttatca
     1741 agacattggc cgagtacatc ggtgtggact ttaggtagac aggttacagc aaagctgaaa
     1801 ccccttccgt aggtctcagg cactatctga tgactttctt agcttttggg tcttttgaag
     1861 ccagtggtct gctcagctga tacattagga accaaatctg tggttttcac atggttgtca
     1921 gtgtcctggc tggccatttt tgtttttgtt tcgtcaactt tacacagggc tgggatcatc
     1981 ccagaaaaaa tgcctccata agattggcct acaggcaagc ctgtgtggta ttttcttgat
     2041 tgatgattga tgtggaaggg ctcagtccac tgtgggtggt gcagtcccta ggcaggtgat
     2101 cctggagact ataagaaagc tggctgagta agccagtcag tagcagtgtt cctccatggc
     2161 ctctgcctca gttcctgctc tgacttccct ccgtaatgga atgtgaccta aaatgtaagt
     2221 tgaaataaaa tcttttcttc ccaag
//
