LOCUS       NM_001107712            4791 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CTTNBP2 N-terminal like (Cttnbp2nl), mRNA.
ACCESSION   NM_001107712 XM_001066527 XM_227556
VERSION     NM_001107712.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4791)
  AUTHORS   Sugimoto,M., Sasaki,S., Gotoh,Y., Nakamura,Y., Aoyagi,Y.,
            Kawahara,T. and Sugimoto,Y.
  TITLE     Genetic variants related to gap junctions and hormone secretion
            influence conception rates in cows
  JOURNAL   Proc Natl Acad Sci U S A 110 (48), 19495-19500 (2013)
   PUBMED   24218568
REFERENCE   2  (bases 1 to 4791)
  AUTHORS   Hong,S.J., Li,H., Becker,K.G., Dawson,V.L. and Dawson,T.M.
  TITLE     Identification and analysis of plasticity-induced late-response
            genes
  JOURNAL   Proc Natl Acad Sci U S A 101 (7), 2145-2150 (2004)
   PUBMED   14766980
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB724536.1 and JAXUCZ010000002.1.
            
            On Jan 10, 2008 this sequence version replaced NM_001107712.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.13874.1,
                                           SRR26643299.11469.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676786 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-680               CB724536.1         19-698
            681-4791            JAXUCZ010000002.1  195196318-195200428 c
FEATURES             Location/Qualifiers
     source          1..4791
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..4791
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /note="CTTNBP2 N-terminal like"
                     /db_xref="GeneID:310760"
                     /db_xref="RGD:1310822"
     exon            1..34
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /inference="alignment:Splign:2.1.0"
     exon            35..141
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /inference="alignment:Splign:2.1.0"
     exon            142..241
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..2059
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /codon_start=1
                     /product="CTTNBP2 N-terminal-like protein"
                     /protein_id="NP_001101182.2"
                     /db_xref="GeneID:310760"
                     /db_xref="RGD:1310822"
                     /translation="MNLEKLSKPELLTLFSILEGELEARDLVIEALKAQHRDTFIEER
                     YGKYNISDPLMALQRDFETLKEKNDSEKQPVCTNPLSILKAVMKQCKNMQERMLSQLA
                     AAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEKSQVKKFEKE
                     QKKLSSQLEEERSRHKQLSSMLVLECKKATSKAAEEGQKAGELSLKLEKEKSRASKLE
                     EELAAERKRGLQTEAQVEKQLSEFDIEREQLRAKLNREENRTRALKEEMESLKKLVKD
                     LEAAQQHSNSSEQGREPVTTSRGTATEPPMRVSVFCQTESIQTERSHSSIMTKLTDTG
                     LPGPSSAPYPYAKANGHCDPETQTTRELTSDSSTENQGPPREKSAVPAQEKPMENGGC
                     PVGTEIPVTMPSHLPSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSSVSSPGYQSS
                     YQVGVNQRFHAARHRFQSQADQDQQASGLQSPPSRDLSPTLLDNSAAKQLARNTVTQV
                     LSRFTNQGPIKPVSPNSSPFGTDYRNLVSTANPRGDTSHSPTPGKVSSPLSPLSPGIK
                     SPTIPRAERGNPPPIPPKKPGLTPSQSVATPGTKTHSQASSLTTTEDLASSCSPSAVV
                     ANGKDVEMLVPTSS"
     exon            242..472
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /inference="alignment:Splign:2.1.0"
     exon            473..580
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /inference="alignment:Splign:2.1.0"
     exon            581..4791
                     /gene="Cttnbp2nl"
                     /gene_synonym="RGD1310822"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggcgggga aggatcccgg agcgccgagg ccagtgttga acacttttcc accatgccaa
       61 caacatttta aatatctgtc aactgaagga aagctctaag actttgtacc tgaggactaa
      121 agtgcagcca ccaattatca ggatgaatct ggaaaaactc agcaagcctg aactgctgac
      181 actgttcagt attcttgaag gagaactcga agcaagggac cttgttatag aagctttaaa
      241 ggcccaacac agagatactt tcattgaaga acgctatgga aaatacaata tcagtgatcc
      301 tctaatggct cttcagagag attttgaaac actgaaagag aaaaatgaca gtgagaagca
      361 gccagtgtgc acaaaccccc tctctatcct caaggcagtg atgaagcagt gcaagaacat
      421 gcaggagcgc atgctgtccc agctggctgc tgccgagagc cggcaccgca aggtgatcct
      481 ggatcttgaa gaagaaagac agaggcatgc acaagatacc gcggaaggag atgatgtcac
      541 ctacatgctg gagaaggaga gggagagact gacgcaacag ttggaatttg aaaagtccca
      601 agtgaagaag tttgaaaaag aacagaagaa gctatctagt cagctggagg aggagcgttc
      661 ccgccacaag cagctgtctt ccatgctggt gcttgagtgc aagaaggcca ccagcaaggc
      721 agccgaggag gggcagaagg ctggagagct gagtctgaag ctggagaagg agaagagccg
      781 ggcgagtaaa ctagaggaag agttggcagc cgagcggaag cggggcctgc agacagaggc
      841 ccaggtggag aagcagttgt ctgagtttga tatcgaacgg gagcagctga gagccaaact
      901 gaaccgagag gagaaccgga cccgagccct gaaggaagag atggagagct tgaagaagct
      961 tgtgaaagac ctagaggcag cccagcagca cagcaacagc agtgagcagg gccgggagcc
     1021 agtgaccaca tccagaggca cagccacaga gcctcccatg cgagtgtctg tgttttgcca
     1081 aacagagagc attcagacag aaagaagcca cagcagcatc atgaccaagc tgacagacac
     1141 tgggcttcca ggtcccagca gtgctcctta cccatatgca aaagctaatg gccactgtga
     1201 ccccgagaca cagactacca gggagctgac ctcagacagc agcacagaaa accaagggcc
     1261 tccacgggag aaatcggcag taccggccca ggagaaaccg atggagaatg gtgggtgtcc
     1321 tgtaggaact gagattccag tcacaatgcc cagtcatctc ccttccagtg gcagctcact
     1381 gtctcccagc agcactgcct cgtcctctct gacatcatct ccttgctctt caccagttct
     1441 aaccaagcgt ctcttggggt catcagtcag cagcccaggc taccagtctt cctaccaagt
     1501 aggggtcaac cagcgtttcc atgcagctcg gcacagattt cagtcccagg cagatcagga
     1561 tcagcaagcc agtggtctcc agagccctcc atccagggac ctgtccccta ccctattaga
     1621 caactctgct gccaagcagc tggcccgaaa cactgtcact caggtgctct ccaggttcac
     1681 taaccaaggg ccaattaagc cagtctctcc caacagttct ccttttggga cagactaccg
     1741 aaatctggtc agcactgcca atcctagagg cgacaccagc cattcaccta ctccagggaa
     1801 ggtgtccagc cctctgagcc ccctttctcc gggaatcaag tccccaacca tccccagagc
     1861 tgagagagga aaccctccac caatcccacc caaaaaacct ggcctcactc cttcacagtc
     1921 tgtcgccact ccagggacca agactcattc ccaggcatcc tccttgacca ccacagaaga
     1981 ccttgccagc agctgctctc ccagtgccgt ggtggccaat ggcaaagatg ttgagatgct
     2041 tgtgcccacc agcagctagt ccccaggagt gagtctcgac acttgacatt ccaccagact
     2101 cgtccaaggc cgcagagtga agccctggag tcagatctgt tatttatttg atagtagcta
     2161 cggccgtatg tgtagtacat tcagtgtatt tactttttgt acttttttaa gtagaaactg
     2221 agtactttgg gtttcacctc tttgtactaa gctagagggg gactcagaca ccgtgcatct
     2281 caagtcaaca gtcaccagca tgctgcgatg ggaaagctga ctgaggcagg ctgtgctctg
     2341 ctgtcagttt gggagctaga actactcagc actcatttca aagtatgcag aagtggtttg
     2401 tgcagatttt tattccagat gaacatgttt taaaagtgcc tgaaatccac tgccacatga
     2461 atgtgattct tcggcagaaa caaaagacat agcatttctt gcagaaaata agatcctctg
     2521 tgaatatgaa tgtcaaaaac caacactgct tttaatcctc tctgactgtt taatgccagc
     2581 tttgtgttct gaaacgaggt ttgcataagt acagtggaat ccttctgaag ggcgtgaact
     2641 ccgtcaggct gagctctgta aagcccttga gaaaccctcc agagcactta gcagttgggg
     2701 tgctgatttt ctcatgaaaa atcaagtcat tctcagtttc ctgcatcagg ttttgaacag
     2761 tgaaatcaca tctccattca aaaccatcct caagcatcgc cacgggacct tctggttctg
     2821 ttgcttttac ttgactagga agtgacacga tgaactcttc attctgtgat cagaaagcaa
     2881 taacttaaaa gtcactcttt gtaatattgt aagtcagaat tatagagttt accaaattgt
     2941 tacatttatt ctcatgctgc cagcacttct atctatggaa ccaaattaac ttttgcccaa
     3001 atggaagtgt acctgtatgt gtatgataca tgccccttac atgttcacca ttctcacact
     3061 taagcacata actgttagtg tgattgtagc tttggagttt gcagtacaag tagaatcaga
     3121 attgcatgtt aagattacct accaaagcag ttagagccag ccagtcaaca ggaatccatt
     3181 agacagggaa gttttcaatc ccaaatgaag ctcacatcgt cagcatggta ggaaagcacc
     3241 acaaaagtag tcctagtgcc acagaactca gctggccaag tgagtgagtg agacagcaca
     3301 gtccctcacg tgctgtccac tcagagtaga aggggcagtg gcaagccaca gtgtcctagt
     3361 cgtgtgtaat agggccaacc ctttgagccc cagctgccac catgcaaaaa ttgcagatca
     3421 cagttaccag ttctctaaac ttttatggaa tttaaatccc cacaagaaga ttctcattca
     3481 aaaatttgtt tttttttaag taccaggaac tgactaaatg ttttcaaatg ctgctaatta
     3541 gacaaacatg gctacagctg attttagctt gcaagctacc acactgcagc ctctcccttc
     3601 ctagaactta tgctgtttcc ctcgtagcga gtttgtatag acagaagcct cccggcctct
     3661 ccactgtgtc agccacatct gaccaagtcc acagaacaga acagtcttgc tcttggcaag
     3721 cagaactccc gactgatcag ctcaggacac tggttacagt tttgtatcca gagtgggaga
     3781 gaggcaggct ttggtgtcta catacattgt tctggccaac atctacccag aagcccctgg
     3841 ccttctgtaa ccttttattg ggaaggagaa tgggtgatca tgtgagaaga cctgatcatg
     3901 tgtttgaaaa accaaaggat tcagtggacc catccaggtt agataactca caaggaatta
     3961 gacattgatt ttcttcttga accacagagc tgaagacaaa atgtctccct aataatttag
     4021 ttgttaataa cctttaatta tatttttatt agcccattga gtcagtgggc aagtcaacag
     4081 aagagtacac tgttgtctct acagctcaca gtctaaatga ttaaggtcag tgcatgcaca
     4141 tgaaagtgtg gctgatgtcc taggaagtgt gactacagaa atgacagaga cgtggggaac
     4201 tagagcagtc ctgcattgaa tttattccta ttgcgagcca aacggaccag tgatgatcaa
     4261 aaaccgaacc ttccagtcag gagcgactgc agtacctgag tgttcttacc tctcttgctt
     4321 taagtggtaa tcttaaaagt tgcattgtgc tcttcctctg tttggagata gatatatata
     4381 gagagagaaa gagagaaata ctataaggaa gtttatttct tagggggtgc actgaacaat
     4441 atttctttta cagcgtaata caggggtggg gatatgcaaa aggaatgtgt atttttgcta
     4501 gttcctatct tctgagataa taagcacaat cctgaaatgg atccaataat tcagctagat
     4561 gttatagatt agtatttcag tttgcagtag attgtgtgtg cactaagtaa aagttccatg
     4621 attcacaatt tgggtgttaa ccatgtcaga gaagctgtta ctggtcagca gaatctatga
     4681 tgcgctaggt gtggcacaaa cattaactag ccattaacat ttgtaaggcc aagtgtacca
     4741 tgcagaagtc ttcattttta tagcagactg cattaaaaca agttaaatca c
//
