LOCUS       XM_039107161            3047 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cortactin binding protein 2 (Cttnbp2),
            transcript variant X4, mRNA.
ACCESSION   XM_039107161
VERSION     XM_039107161.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107161.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3047
                     /gene="Cttnbp2"
                     /gene_synonym="Cbp90; Cortbp2"
                     /note="cortactin binding protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 27 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:282587"
                     /db_xref="RGD:628691"
     CDS             141..2906
                     /gene="Cttnbp2"
                     /gene_synonym="Cbp90; Cortbp2"
                     /codon_start=1
                     /product="cortactin-binding protein 2 isoform X4"
                     /protein_id="XP_038963089.1"
                     /db_xref="GeneID:282587"
                     /db_xref="RGD:628691"
                     /translation="MATDSASCEPDLSRAPGDAEGATAEAAKKEFDVDTLSKSELRML
                     LSVMEGELEARDLVIEALRARRKEVFIQERYGRFNLNDPFLALQRDYEAGAGDKEKPV
                     CTNPLSILEAVMAHCRKMQERMSAQLAAAESRQKKLEMEKLQLQALEQEHKKLAAHLE
                     EERGKNKHVVLMLVKECKQLSGKVVEEAQKLEEVMVKLEEEKKKTSELEDQLSAEKQR
                     SAGMEAQLEKQLFEFDTEREQLRAKLTREEAHTTDLKEEIDKMKKMMEQMKKGNDGKP
                     GLSLPRKTKDKRLASISVATEGPVTRSVACQTDVVTESTDPVKKLPLSVPIKPSTGSP
                     LVSTNTKGNVGPSALLIRPGIDRQASHSDLGPSPPTALPSSASRIEENGPSAGNAPDL
                     SNSTPSTPSGTAPAAAQTLGAAPQNHSQAPPVHSLHSPCANTHPGLNPRIQAARFRFQ
                     GNANDPDQNGNNTQSPPSRDVSPTSRDNLVAKQLARNTVTQALSRFTSPQAGASSRLG
                     ASPGGDAGTCPPVGRTGLKTPGAARVDRGNPPPIPPKKPGLSQTPSPPHPQLRASNAG
                     AKVDNKIVASPPSTLPQGTKVVNEENVPKSSSPQLPPKPSIDLTVASAGCPVSALATS
                     QVGAWPAETPGLNQPACTDSSLVIPTTVAFRSSINPVSASSRSPGASDSLLVTASGWS
                     PSLTPLLMSGGPAPLAGRPTLLQQAAAQGNVTLLSMLLNEEGLDINYCCEDSHSALYS
                     AAKNGHTDCVRLLLNAEARVDAADKNGFTPLCVAAAQGHFECIELLTAYNANINHSAA
                     GGQTPLYLACKTGNKECIKLLLEAGTDRSIKTRDGWTPIHAAVDTGNVDSLKLLMYHR
                     VPAPGNSLSAEEPKSGLFSLNGGESPPGSSKPVVPADLINHADKEGWTAAHIAASKGF
                     KMLLKYP"
ORIGIN      
        1 aaaggcggga ggggaccgcc gagctccggg gctgagagcg ccgcggccac agccagcagc
       61 gggttaagcg ccgcccgcgc cgagagagct gagccctgcc gccgctccga gctcgcattc
      121 ggatccgcta gagcaggaag atggcgacgg acagcgcgag ctgcgagccc gacttgtccc
      181 gcgccccggg cgacgcggag ggggccacgg cggaggcggc gaaaaaggag tttgatgtgg
      241 acaccctcag caaatcagag ctgcggatgc tcctcagtgt gatggaaggt gaactagaag
      301 ccagagacct cgtgattgag gccctgcggg ctcgcaggaa ggaggtgttc atccaggaac
      361 gttatgggag atttaatcta aacgaccctt tcctggcact ccagagagac tatgaagcgg
      421 gtgctggtga caaagagaag ccagtctgca ccaacccact ctccattctt gaagccgtca
      481 tggcccactg cagaaaaatg caagaaagaa tgtccgcaca gctggctgcc gctgagagta
      541 ggcagaaaaa gttggagatg gaaaagctcc agcttcaggc ccttgaacag gagcacaaga
      601 agctggctgc ccacctggag gaagagaggg gcaagaacaa gcacgtggtc ctgatgctgg
      661 tgaaggagtg caagcagctc tcaggcaaag tcgtagagga agctcagaag ctggaggaag
      721 tcatggtgaa attggaggag gaaaagaaaa agacaagtga gttagaagac cagctctccg
      781 ctgagaaaca gagaagcgct ggaatggaag ctcagctgga gaaacagctc tttgagtttg
      841 atacggaacg ggagcagctg cgggccaagc tgacccgaga agaagcacac accaccgacc
      901 tcaaagagga gatagacaag atgaagaaaa tgatggagca aatgaagaaa ggcaacgatg
      961 ggaagcccgg actctccctc ccccggaaga caaaagataa gcgactggct tccatatctg
     1021 tggcaacaga agggcctgtg acaaggtctg ttgcttgcca gacagatgta gtgacagaaa
     1081 gcactgaccc tgtgaagaaa ttgcctttgt ctgtacccat aaaaccttcc acagggagcc
     1141 ccctagtttc cacaaacaca aaagggaatg tgggccccag tgccctgctg attagaccag
     1201 gtattgatag acaagcttcc cacagtgact tgggtccctc tccacctact gccctaccgt
     1261 caagtgcaag tagaattgag gaaaacggac caagtgcagg caatgcccct gacctatcaa
     1321 acagcacacc ctcaactcct agtggaactg cccctgctgc tgctcagaca ctaggtgcag
     1381 caccccagaa ccattcacaa gctcctcctg tgcacagttt acattcaccg tgtgccaaca
     1441 ctcatccagg tctcaaccca cgcatccaag cagctagatt tagatttcag ggcaatgcaa
     1501 atgacccaga ccagaatgga aataacactc aaagtcctcc ctccagagat gtttctccta
     1561 cgagtcgtga caacctagta gccaagcagc tagctcggaa tactgtgacc caagcgctgt
     1621 ccagatttac cagccctcaa gcaggtgctt cttcaaggct gggagcatct ccaggaggcg
     1681 atgctggcac ctgccctcca gttggtcgaa ccggtttaaa gactccaggg gcagcacgag
     1741 ttgacagagg aaatcctcct cctatccctc ccaaaaagcc agggctctcc caaactcctt
     1801 ctccaccaca ccctcaactg agggcctcca atgcaggggc caaagttgat aacaaaattg
     1861 tggcttcacc tccctctaca ttgccacaag ggaccaaggt agtaaatgag gagaacgtcc
     1921 ctaagtcatc ctcccctcag ctgccaccaa aaccatccat agatttaact gtggcatctg
     1981 caggctgtcc cgtttcggcc ctggccacgt ctcaggtggg tgcctggcct gctgaaaccc
     2041 ctggactgaa ccaacccgca tgtacagaca gctcccttgt cattcccacc accgttgcct
     2101 ttcgctcttc cataaaccct gttagtgcct catcccgtag ccccggtgcc tcagacagcc
     2161 tcttggtaac agcatcaggc tggtcaccct ccctaacccc tttgctaatg agtggtggtc
     2221 ctgcccccct ggctggcagg cccacccttc ttcagcaagc tgctgcccag ggaaatgtca
     2281 ctctattatc aatgctgctt aatgaagaag gactggacat aaattactgc tgtgaagata
     2341 gccattctgc cttgtattct gctgctaaga atggacatac agactgtgtg cgattgctgc
     2401 tgaatgcaga agcccgcgtc gacgctgctg ataaaaatgg cttcacaccc ttgtgcgttg
     2461 cagccgctca gggacatttt gaatgtatag aattactaac tgcatacaat gccaacatta
     2521 atcactctgc tgctggagga cagacacctc tgtacctggc ctgtaaaact ggaaataagg
     2581 aatgtatcaa actcctgctg gaagctggca ctgaccggag tataaaaacc agagatggct
     2641 ggacaccaat tcatgcagcc gtggacactg gtaatgtgga cagcctcaag ctattgatgt
     2701 accatagagt gccagcccct ggaaactctt tgagtgcaga agagcccaag tcaggcttgt
     2761 tcagcttgaa tggaggtgag agccctccag gttcatctaa gcctgtggtt cctgcggacc
     2821 tcattaacca cgctgacaaa gaaggctgga ctgctgccca tattgctgct tccaaaggtt
     2881 tcaagatgct cttaaaatac ccttaaggat ttccgtgggt gaaattcaac caagcaacga
     2941 cggttctgac gactttgaat gtgaacacac aatatgcact ttaaatatcc gcaaacagac
     3001 atcatgggaa gatttttcaa aagcagtgag tcaggctctg acaaatc
//
