LOCUS       XM_039089019            2782 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cortactin (Cttn), transcript variant
            X5, mRNA.
ACCESSION   XM_039089019
VERSION     XM_039089019.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2782
                     /gene="Cttn"
                     /gene_synonym="Cttnb"
                     /note="cortactin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 70 ESTs, 22 long
                     SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 112 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:60465"
                     /db_xref="RGD:619839"
     CDS             231..1538
                     /gene="Cttn"
                     /gene_synonym="Cttnb"
                     /codon_start=1
                     /product="src substrate cortactin isoform X5"
                     /protein_id="XP_038944947.1"
                     /db_xref="GeneID:60465"
                     /db_xref="RGD:619839"
                     /translation="MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTV
                     QGSGHQEHINIHKLRENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGH
                     EYQSKLSKHCSQVDSVRGFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYVKGFGG
                     KFGVQTDRQDKCALGWDHQEKLQLHESQKDYAKGFGGKYGVQKDRMDKNASTFEEVVQ
                     VPSAYQKTVPIEAVTSKTSNIRANFENLAKEREQEDRRKAEAERAQRMAQERQEQEEA
                     RRKLEEQARAKKQTPPASPSPQPAEDRPPSSPIYEDAAPLKAEPSYGSSEPEPEYSTE
                     AAGLPEASNQQGLAYTSEPVYETTEVPGHYQAEDDTYDGYESDLGITAIALYDYQAAG
                     DDEISFDPDDVITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ"
ORIGIN      
        1 ggggcgggga cggcctggaa tagggcggga tcttgcgtgg ccccggatgc ggccccgcct
       61 ccgcggaacc ggaagtgagc gggcacaggg agcggcgggg cgcggcggga gcctggcgga
      121 ccctgctggt gcggtaatca ttgatcgtca cagatgccct cacattctgc cttggattcc
      181 tcggatacag acggactatt ctgagctgct tttcccagca aaagaaaaag atgtggaaag
      241 cttctgcagg ccatgctgtg tccatcaccc aggatgatgg gggagccgat gactgggaga
      301 ctgaccctga ttttgtgaac gatgtgagtg aaaaggaaca gagatggggc gccaaaaccg
      361 tgcagggatc ggggcaccag gaacacatca acatacacaa gcttcgagag aatgtcttcc
      421 aagaacacca gacactcaag gagaaggagc tggaaacggg acccaaggct tcccatggct
      481 atggcgggaa gtttggtgtg gagcaagata ggatggacaa atcagctgtg ggccatgagt
      541 accagtcaaa gctctccaag cactgctcac aagtggactc agtccggggc ttcggaggca
      601 agttcggtgt ccagatggac agggtggatc agtctgctgt aggctttgaa taccagggga
      661 agacggagaa gcacgcctcc cagaaagact atgtaaaagg ctttggagga aagtttggtg
      721 tgcagacaga cagacaggac aagtgtgccc ttggctggga ccatcaggag aagctgcagc
      781 tgcatgaatc ccaaaaagac tatgccaaag gattcggcgg gaagtatggg gtgcagaagg
      841 atcggatgga caagaacgca tccacctttg aagaagtggt ccaggtgccg tctgcctatc
      901 agaagactgt ccccattgag gctgtgacca gcaaaaccag taatattcgt gctaactttg
      961 aaaacctggc aaaggagaga gagcaggagg acagacggaa ggcagaagcc gagagagctc
     1021 agcggatggc ccaagaaagg caggagcagg aggaggctcg aaggaagctg gaagagcaag
     1081 ccagagccaa gaagcagaca ccccctgcat cccctagtcc tcagccagct gaagacagac
     1141 caccatccag ccccatctat gaggatgcag ctccgttgaa ggccgagccg agctacggaa
     1201 gtagtgagcc tgagcctgag tacagcactg aggctgcagg ccttcctgag gccagcaacc
     1261 agcaaggtct ggcctacaca tcagagcctg tttacgagac cacagaggtt cctggccact
     1321 accaagcaga ggatgacacc tacgatgggt atgagagtga cctgggcatc acagccatcg
     1381 ccctgtatga ctaccaggct gctggcgatg atgaaatctc ctttgaccct gatgatgtca
     1441 tcaccaacat agaaatgatt gacgatggct ggtggcgtgg ggtgtgcaag ggcagatatg
     1501 ggctcttccc ggccaactat gtggagctgc ggcagtaggg tggccaccca gagcctacca
     1561 gcaccagcac tgggttcaca ctacatcgcg tctgcgtgtg ttgaattggt ttctgcttcc
     1621 atttctgttt ttgttctttt tccgaaggtg gggaggggaa tatacatatt gcctttatat
     1681 ttaatacgtc tgctgatgct tcggggcatg tcctgccaca gaatttgcta atgtctgatg
     1741 atcatgttca cagagaacat gggtgattac tttcagccat ccaggtgttt tagctttgcc
     1801 aagccgactg tggtacgtag ccacttcagg gcatgcactt ctcctgaggt tggtggtaca
     1861 tgtggccttg tgcccacttc ccttccatgg cagtcgggtt cccaggatgg agacagtgct
     1921 cctggagtgg ccactcaggg aggaggctct ctgggatcca gtgtttggaa gaagaggaag
     1981 ggcgtccaaa ggaaatcgag gtcccggagc gttgaccctt cgagggaagt cgtatctttc
     2041 agtcctgacc atttgagcca ggatctgggc ttcctttact ccacctcctc atctcaattc
     2101 aacctgacac cccagtcctg gttgacccct ttctcctgct gccttgccct gaagtgttac
     2161 tttctcccgt ctgtattcga ggtctgtagc acacaatgca tctcagagat gtgctggcca
     2221 cttatcctga gcttggcctg cgacatggga gacttgggga gggagtcttg gacttgctca
     2281 tgactcctgc tcagccagag tgagctgtgt ggccagccac ctggctgggc agacagatac
     2341 cttctccctg caagcctcca gaaacatgct ccctgtgggg agctgtgttc tttttgccaa
     2401 atatgttcaa ttatagtcag ttgatagatt aatgtggctg aacacaggac tgagtgaact
     2461 gatccacctg ggtgcctccc cagcatcctt gatcaactgt ccctaagatg ctttcaaagt
     2521 gtctgagaca ccaggaggct gggccacact ggttatacac agtcaagcga gcagcacagc
     2581 atgtccttgt agatgcgtcc ccacctctgg gacacatgag gaccgatgcc cgttttctcc
     2641 ccatgagctt tcctgtagaa tccttgcctt tccgttgtta ggttgggttt tctatatgaa
     2701 ttatcatctg gaattctgta gcacacctta taggtatgga tttttttaaa ttaaatattc
     2761 agaataaact ttttttgatc ca
//
