LOCUS       NM_001024242            1272 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus cathepsin W (Ctsw), mRNA.
ACCESSION   NM_001024242 XM_215183
VERSION     NM_001024242.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC093401.1.
            
            On May 27, 2005 this sequence version replaced XM_215183.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC093401.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00155324,
                                           SAMEA5756307 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1272
                     /gene="Ctsw"
                     /note="cathepsin W"
                     /db_xref="GeneID:293676"
                     /db_xref="RGD:1309354"
     exon            1..86
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     CDS             6..1121
                     /gene="Ctsw"
                     /codon_start=1
                     /product="cathepsin W precursor"
                     /protein_id="NP_001019413.1"
                     /db_xref="GeneID:293676"
                     /db_xref="RGD:1309354"
                     /translation="MTLTAHLFYFLALLLAGQGLSDSLLTKDAGPRPLELKEVFKLFQ
                     IQFNRSYSNPAEYTRRLGIFAHNLAQAQRLQEEDLGTAEFGQTPFSDLTEEEFGQLYG
                     HQRAPERILNMAKKVKSERWGESVPPTCDWRKVKNIISSIKNQGNCRCCWAIAAADNI
                     QTLWRIKTQQFVDVSVQELLDCDRCGNGCNGGFVWDAYITVLNNSGLASEEDYPFQGH
                     QKPHRCLADKYRKVAWIQDFTMLSSNEQVIAGYLAIHGPITVTINMKLLQYYQKGVIK
                     ATPSTCDPHLVNHSVLLVGFGKEKGGMQTGTLLSHSRKPRRSTPYWILKNSWGAEWGE
                     KGYFRLYRGNNTCGIAKYPITARVDRPVKKAPVSCPP"
     exon            87..171
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            172..285
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            286..440
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            441..537
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            538..618
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            619..744
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            745..809
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            810..1010
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1245
                     /gene="Ctsw"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaccatgac actgacagcc cacctcttct actttctggc cctgttgtta gcaggccaag
       61 gcctcagtga ctccctcctc accaaggatg caggtccccg accactggag ctgaaagaag
      121 tcttcaagct gttccagatc cagttcaacc gaagttactc aaacccagca gagtacactc
      181 gccgtctggg tatctttgcc cacaacctgg ctcaggcaca acggctacag gaagaagacc
      241 tgggtacagc tgagtttgga cagactccat tcagtgacct cacagaggaa gagtttggcc
      301 agttatacgg gcaccagagg gcaccggaaa ggatcctcaa catggccaaa aaggtgaagt
      361 ctgaaaggtg gggggaatct gtgcccccta cctgtgactg gcgtaaagta aagaacatca
      421 tctcatcgat caagaaccag ggaaactgca ggtgctgctg ggccatagca gcagcagaca
      481 acatccagac tctgtggcgc atcaaaacac aacagtttgt ggacgtctct gtgcaggagc
      541 tgctggactg tgaccgctgt ggaaatggct gcaatggtgg cttcgtgtgg gacgcatata
      601 taactgtcct gaataacagt ggcctggcca gcgaagagga ttacccattc caggggcacc
      661 agaagcccca caggtgtctg gcggacaagt ataggaaggt ggcctggatc caggacttca
      721 ccatgttgtc cagtaatgag caggtaattg ccggctacct ggctatccat ggccctatca
      781 cggtgaccat caacatgaag ctactgcagt attaccagaa gggtgtgatc aaggctacac
      841 ccagtacctg tgacccacac cttgtgaacc attctgtctt gctggtgggt tttggcaagg
      901 agaaaggggg catgcagaca gggacactct tgtcccattc tcgcaaacct cgccgctcca
      961 ccccctactg gatcctgaag aactcctggg gagctgagtg gggcgagaag ggttacttca
     1021 ggctctaccg tgggaacaac acctgtggaa tcgccaagta cccgatcaca gctcgagtgg
     1081 accgaccagt taagaaagcc ccagtctctt gtccaccttg aggccagcag ccactcttca
     1141 gcctctccta catggccact gccctccttg tcagccccgc cctgagcttc tgcctgactt
     1201 tcccatcctg tctgtatggc ttcataaacc gagacatgct ccatgaaaaa aaaaaaaaaa
     1261 aaaaaaaaaa aa
//
