LOCUS       NM_001408676            1307 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus cathepsin L-like 3 (Ctsll3), mRNA.
ACCESSION   NM_001408676 XM_006253530
VERSION     NM_001408676.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1307)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jun 21, 2022 this sequence version replaced XM_006253530.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB548024.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                JAXUCZ010000017.1  3894151-3894209
            60-196              JAXUCZ010000017.1  3895407-3895543
            197-319             JAXUCZ010000017.1  3895822-3895944
            320-466             JAXUCZ010000017.1  3896041-3896187
            467-691             JAXUCZ010000017.1  3896376-3896600
            692-854             JAXUCZ010000017.1  3897096-3897258
            855-963             JAXUCZ010000017.1  3897832-3897940
            964-1307            JAXUCZ010000017.1  3898389-3898732
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1307
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /note="cathepsin L-like 3"
                     /db_xref="GeneID:498691"
                     /db_xref="RGD:1560071"
     exon            1..59
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     exon            60..196
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..1063
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /EC_number="3.4.22.15"
                     /note="cathepsin L1; procathepsin L"
                     /codon_start=1
                     /product="cathepsin L-like 3 precursor"
                     /protein_id="NP_001395605.1"
                     /db_xref="GeneID:498691"
                     /db_xref="RGD:1560071"
                     /translation="MTPIFLLATLCLGMISAAPTHDPSFDTVWEEWKTKHGKTYNTNE
                     EGQKRAVWENNMKMINLHNEDYLKGKHGFSLEMNAFGDLTNTEFRELMTGFQGQKTKM
                     MKVFPEPFLGDVPKTVDWRKHGYVTPVKNQGPCGSCWAFSAVGSLEGQVFRKTGKLVP
                     LSEQNLVDCSWSHGNKGCDGGLPDFAFQYVKDNGGLDTSVSYPYEALNGTCRYNPKYS
                     AAKVVGFMSIPPSENALMKAVATVGPISVGIDIKHKSFQFYKGGMYYEPDCSSTNLNH
                     AVLVVGYGEESDGRKYWLVKNSWGRDWGMDGYIKMAKDWNNNCGIASDASYPIV"
     exon            197..319
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     exon            320..466
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     exon            467..691
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     exon            692..854
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     exon            855..963
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1307
                     /gene="Ctsll3"
                     /gene_synonym="RGD1560071"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcaatcag tgaagacctg agcctgtgaa gcccacctgg ccagctgtgg agatcccagg
       61 gtttgaaagc atgactccaa ttttcctcct ggccaccctt tgcttgggga tgatctcagc
      121 tgctccaaca catgacccca gtttcgatac tgtatgggag gaatggaaga ccaaacatgg
      181 gaaaacatac aacacgaacg aagaaggaca gaagagagca gtgtgggaga acaacatgaa
      241 gatgatcaac ctgcacaacg aggactatct gaaggggaag catggcttca gcttggagat
      301 gaatgccttt ggtgatttga caaatacaga attcagggaa ttgatgactg gctttcaagg
      361 ccagaagacc aagatgatga aggtcttccc agagcccttt ctgggtgatg tccccaagac
      421 tgtggattgg agaaagcatg gctatgtgac tcccgtgaaa aaccagggtc cttgtggctc
      481 ttgttgggct tttagtgcag ttggttccct agaaggacaa gtgttccgga aaacaggcaa
      541 actggtccct ctgagtgaac agaacctagt agactgctcc tggtcacatg gcaacaaagg
      601 ctgcgatggt ggcttgccag attttgcctt ccagtatgtg aaggataatg gaggcctgga
      661 caccagtgtg tcctatccat atgaagccct gaatggaacg tgtaggtaca atcctaaata
      721 ctctgctgct aaagtcgtgg gcttcatgag catcccacct agtgaaaatg ccctgatgaa
      781 ggctgtggct actgtggggc ctatctcagt tggaattgat attaagcaca agtcgttcca
      841 gttctataag ggtggcatgt actatgagcc agactgtagc agcactaatc tgaatcatgc
      901 tgtcctggtg gttggctatg gtgaagaatc agatggcagg aaatactggc tggtcaagaa
      961 cagctggggt cgagactggg gcatggatgg ctacataaag atggccaaag actggaacaa
     1021 caactgtggg attgcttccg atgcttctta ccctatcgtt tgagctgccc aacaacaagg
     1081 agtggactga ggagggcttt ccacttcctg gaccagcctc agctctgtag gccatggacg
     1141 acaagccact gaagtttcac gctatgtatg gtgtgaattc tgggacattt tattccagtt
     1201 aaattgaact ggcaccctat ggctgtaagc agctttgtga ccatggcttt tggatttcaa
     1261 ttgtttccaa gatgtataca atttctataa aacctacatt gaaaata
//
