LOCUS       XM_225128               1002 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus cathepsin 8-like 1 (Cts8l1), mRNA.
ACCESSION   XM_225128
VERSION     XM_225128.10
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086035) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_225128.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               JAXUCZ010000017.1  3450670-3450795
            127-249             JAXUCZ010000017.1  3451079-3451201
            250-312             JAXUCZ010000017.1  3451294-3451356
            313-313             "N"                1-1
            314-396             JAXUCZ010000017.1  3451357-3451439
            397-621             JAXUCZ010000017.1  3454895-3455119
            622-784             JAXUCZ010000017.1  3455554-3455716
            785-902             JAXUCZ010000017.1  3457137-3457254
            903-1002            JAXUCZ010000017.1  3458210-3458309
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1002
                     /gene="Cts8l1"
                     /note="cathepsin 8-like 1; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 20 Proteins"
                     /db_xref="GeneID:290972"
                     /db_xref="RGD:1309469"
     CDS             1..1002
                     /gene="Cts8l1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: cathepsin 8"
                     /protein_id="XP_225128.9"
                     /db_xref="GeneID:290972"
                     /db_xref="RGD:1309469"
                     /translation="MSPFVLLTILCLAVARDTQSSDPSLDSEWQEWKIKYDKNYSLEE
                     EGQRRAVWEENMKVVKQHNIEYDQGKNNFTMKVNAFGDMTGEEFRKMMIDIPVLRFRK
                     KKXIQSHTGGYLPKFVDWRRRGYVTSVKNQGRCNSCWAFSVAGAIEGQMFRKTGRLVS
                     LSAQNLVDCSRPEGNRGCISGHTFYTFKYVWNNGGLEAESTYPYEGREGHCRYLPERS
                     AARIKGFSIISSTEEALMNAVATIGPISVGIDASHESFTFYSGGIYYEPKCRNKTVNH
                     AVLLVGYGYEGRESDGRKYWLIKNSHGVGWGMNGYMKLARGWNKHCGIATCAFYPRV"
ORIGIN      
        1 atgagtcctt ttgtcctgct gaccatcctg tgcttggcag tagccagaga tactcaatca
       61 tctgatccca gtttggattc tgaatggcag gagtggaaga taaaatatga caaaaactac
      121 agcctggaag aagaaggaca aaggagagca gtatgggaag aaaacatgaa agtggtaaaa
      181 caacataata ttgaatatga ccagggaaag aataacttca ccatgaaggt caatgccttt
      241 ggtgacatga ctggtgagga attcaggaaa atgatgattg atattccagt cctgcgtttt
      301 aggaagaaaa aangtatcca gtcacatact ggtggttatc tcccgaaatt tgtggactgg
      361 agaagaagag gttatgtgac ttctgtgaag aatcagggca gatgtaattc ttgttgggct
      421 ttttctgtgg ctggtgccat agagggacag atgttccgga aaacaggcag actggtctca
      481 ctgagtgcac aaaacctagt ggactgttct agacctgaag gaaatcgtgg ctgtatttca
      541 ggccacacat tttatacttt caagtatgtg tggaataatg gaggtctgga ggctgagtca
      601 acctatcctt atgaaggaag ggaaggacac tgtcggtacc ttcctgaacg ttctgctgct
      661 aggatcaaag gtttttcaat tatctcaagc actgaggaag ctttaatgaa tgctgtagca
      721 actatagggc ccatttctgt tggaattgat gcttcacatg aatctttcac attttatagt
      781 ggaggtattt attatgagcc aaaatgtagg aataaaactg tgaaccatgc tgttctgtta
      841 gttggctatg gctatgaagg aagagagtca gatggaagga aatactggct gataaagaac
      901 agtcatggtg taggatgggg catgaatggc tacatgaagc ttgccagagg ctggaacaaa
      961 cactgtggaa ttgctacatg tgctttttat cccagagtgt aa
//
