LOCUS       XM_039101549            5363 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus catenin delta 2 (Ctnnd2), transcript
            variant X3, mRNA.
ACCESSION   XM_039101549
VERSION     XM_039101549.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5363
                     /gene="Ctnnd2"
                     /note="catenin delta 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 19 ESTs, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 17 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:114028"
                     /db_xref="RGD:620734"
     CDS             109..3681
                     /gene="Ctnnd2"
                     /codon_start=1
                     /product="catenin delta-2 isoform X3"
                     /protein_id="XP_038957477.1"
                     /db_xref="GeneID:114028"
                     /db_xref="RGD:620734"
                     /translation="MELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAGEQ
                     FHWQTQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTSERPSLLSQSALQLN
                     SKPEGSFQYPASYHSNQTLALGDTAPSQLPARSTQARAAGQSFSQGTTGRSGHLAGSE
                     PAPPPPPPREPFAPSLGSAFHLPDAPPAAAALYYSSSTLPAPPRGGSPLTTTQGGSPT
                     KLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPT
                     VQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAG
                     SRASYSSQHGHLAPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGT
                     FRTSTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQLQYCA
                     SADSPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQS
                     NAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKAND
                     DNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDALAVLTN
                     AVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDA
                     LLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANG
                     KDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECS
                     NPDTLEGAAGALQNLAAGSWKGWAEDVAGMAYALRSLPEGAPCLPQWSVYIRAAVRKE
                     KGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNN
                     TGSKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVK
                     AASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVS
                     PNNRSASAPASPREMISLKERKTDYESAGNSATYHGTKGEHTSRKDTMTAQNTGVSTL
                     YRNSYGAPAEDIKQNQVSTQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPP
                     ASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV"
ORIGIN      
        1 acaataaaca ctaacctcac ttcacttccc aatgcttccg ttgttacttg cggtgtctta
       61 tgcttttcaa gtttcttaac tgcaggctgg gagtcctgtt tggaatatat ggaattacag
      121 tttgaaaggc tgacccgaga gctggaggct gaacgccaga tcgtggccag ccagctggag
      181 agatgcaagc ttggctccga gacaggaagc atgagcagca tcagttcagc aggagagcag
      241 tttcattggc agacacaaga tggccaaaaa gacatcgaag atgaactcac aacaggcctt
      301 gagctggtgg actcctgcat ccgctctctg caggagtcag gcattcttga cccacaggat
      361 tactccacaa gtgaaaggcc cagcctgctc tcccagagtg cacttcagct caattccaaa
      421 cctgaagggt ctttccagta tccggccagc taccatagca accagaccct ggccctgggt
      481 gacacagccc cttctcagct cccagcacgc agcacgcaag cccgagctgc cggacagagc
      541 ttcagccagg gcacgaccgg tcgctcgggg cacctggcgg gctccgagcc tgcgccaccg
      601 cctccgcctc cgcgggagcc cttcgcgccc agcctgggca gcgctttcca cctgcccgac
      661 gcgccgcccg ccgccgcggc gctctactac tccagctcca cgctgcccgc gccgccgcgc
      721 gggggctccc cgctgaccac cacgcaaggc ggctcgccca ccaagctgca gcgcggaggc
      781 tcggccccgg agggtgccgc ctacgccgct ccgcggggct cctcgcccaa gcagtcgccc
      841 agccgcctgg ccaagtccta cagcaccagc tcgcccatca acatcgtcgt gtcctcggcc
      901 ggcctgtccc cgatccgcgt gacctcgccc cccaccgtgc agtccaccat ctcctcttcg
      961 cccatccacc agctgagctc caccatcggc acctacgcca ccctgtcgcc caccaagcgc
     1021 ctggtccacg cgtccgaaca gtacagcaag cattcgcagg aactgtatgc caccgccacc
     1081 ctccagaggc cgggcagcct ggcagctggg tcccgagcct cgtatagcag ccagcatggg
     1141 cacctggccc ctgagctgcg ggccctgcag tccccagagc accacataga ccccatctat
     1201 gaagaccgtg tctatcagaa gccccctatg aggagtctca gccagagcca gggggatcct
     1261 ctgccgccag cacacaccgg caccttccgc acgagcacag ccccatcctc ccctggtgtc
     1321 gactccgtcc ccttgcagcg cacaggcagc caacacgggc cacagaatgc cgcagcagcc
     1381 accttccaga gggccagcta tgctgctggc ccagcctcca actacgcaga cccctacaga
     1441 cagctgcagt attgtgcctc cgctgactct ccgtacagca aatctggccc tgccctccca
     1501 cccgaaggca ccttggccag atccccgtcc attgacagca ttcagaaaga ccccagggag
     1561 ttcggatgga gagacccgga gctacctgaa gtgatacaga tgttacagca tcagttccct
     1621 tctgtccagt ccaacgctgc agcttacctg caacacctct gcttcggaga caataagatc
     1681 aaggcagaga taaggagaca aggtgggata cagctcctgg tggacctgct ggatcaccgg
     1741 atgacagaag tccaccgtag tgcctgtggg gctctgagga acctggtata tggaaaggcc
     1801 aatgatgata acaaaatcgc cctgaaaaac tgtggtggta tcccagcact ggtgagactc
     1861 cttcgcaaga ccacagacct ggagatccgg gaactggtca caggagtcct ttggaacctc
     1921 tcatcatgcg atgccctcaa gatgccaatc atccaggacg ccctggcagt gctgaccaat
     1981 gcagtgatca tccctcactc gggctgggag aattcacctc ttcaggacga ccggaaaata
     2041 cagctgcatt catcacaggt gctgcgcaac gccactgggt gcctaaggaa tgtaagttca
     2101 gctggagagg aggcccgccg cagaatgcgg gagtgtgatg ggctcacgga tgccttgctg
     2161 tacgtgattc agtctgcact ggggagcagt gagatcgata gcaagaccgt tgaaaactgt
     2221 gtgtgcatct tgaggaacct ctcataccgg ctagcagcag aaacgtctca gggacagcac
     2281 atgggcacag acgagctgga cgggctgctc tgcggggagg ccaatggcaa ggacgcagag
     2341 agttctgggt gctggggcaa gaagaagaag aaaaagaaat cccaggatca gtgggatgga
     2401 gtaggacctc ttccagactg tgcagaacca ccaaaaggga tccagatgct gtggcaccca
     2461 tccatagtca aaccctacct cacactgctc tctgagtgct caaacccaga cacgctggaa
     2521 ggggcagcgg gcgccctgca gaacttggct gcagggagct ggaagggctg ggctgaggat
     2581 gtggcaggca tggcgtatgc cctacgttca ctgccagagg gggctccctg cctgccacag
     2641 tggtccgtgt atatccgagc tgctgtccgg aaagagaaag gcctgcccat tcttgtggag
     2701 ctcctccgaa tagacaatga ccgtgtagtg tgtgcagtgg ccacggcact ccggaacatg
     2761 gccctggatg tcagaaacaa ggaactcatt ggcaaatatg caatgagaga cctggtccac
     2821 cggcttcctg gtgggaacaa cagcaacaac acagggagca aggccatgtc agatgacacc
     2881 gtgacagccg tgtgctgtac cctgcatgaa gtgatcacca agaacatgga gaatgccaag
     2941 gccttacggg atgctggcgg cattgagaag ttggtcggca tctccaaaag caaaggagat
     3001 aagcactctc caaaggtggt caaggctgct tctcaggtcc taaacagcat gtggcagtat
     3061 cgagatctga ggagtctgta caagaaggat ggatggtcac aatatcactt tgtagcctca
     3121 tcttcaacca tcgagaggga tcgacaaagg ccctactcct cctcccgcac accttccatc
     3181 tctcctgtgc gtgtgtctcc caacaaccga tcagcaagtg ccccagcttc acctcgggaa
     3241 atgatcagcc tcaaagaaag gaagacggac tatgagtccg ctggcaacag cgccacttac
     3301 catggaacta aaggagagca cacctccaga aaagacacca tgacagctca aaacactgga
     3361 gtttcaactt tgtataggaa ttcatacggt gcacccgctg aagacatcaa gcagaaccag
     3421 gtttccacac agcctgtccc ccaggaacca agcaggaaag actacgagac ctaccagccc
     3481 ttccagaatt ccacacgaaa ttatgatgag tccttctttg aggaccaggt tcatcaccgc
     3541 cctccagcga gcgagtacac catgcacctg ggcctcaagt ccactggcaa ctatgtcgac
     3601 ttctactccg ctgcccgtcc ttacagtgaa ctgaactatg aaacgagcca ctacccggcc
     3661 tcgcccgact cctgggtgtg aggagtcagg acacgaggca ctctggggac agtgcatgtg
     3721 catgcataca ccacaggaca ttctgtttct tttcttttct tttctctctt tttttttctt
     3781 tccctgcaaa tttagtttgt taaagcctgt tccaaaagga aggctgtgat aaccagaaag
     3841 aaatactcag agctatttta gaaagctaaa atgaatcgag cgttaaccag gaaatcgata
     3901 ggaagctaaa cgcaatccta attgtgaccc tattcaacac ctttctagtt tgaaccgtag
     3961 cgttttgaaa gtgctttata gtggggcggc tgaaggaaga agagaggaga cagtcagggt
     4021 ggtgggcgtg gaggttatcg ctgagcacaa ggcggaatag tttacacact gtgggggaac
     4081 ggcttctcac gctttgttta ctctcttcac ccatgtgact ctaggcttcc agttgcattg
     4141 gggttcctct gtacagcaag acgtctcttg ccttttgtta atgcattgtt gtaaagtatt
     4201 tgatgtacat tacagattaa agacgaagag tgcattgtgt atattacacc aatgccactg
     4261 tgtttcctca tcaatggttc taaatattgc tccaatctca aacttttgaa agatgtatgg
     4321 gtttccagtt ttcttttctt ttctttctcc cagtatgttt taacaaaaaa ggaaaaaaaa
     4381 acaggaaaaa aaaggaatat ttagcagtat tgttcgttct gatatgtgat ttgtttgtgg
     4441 caactaaacg cggcatccag cagtttctcc cgagctgaca cgtcattcca cacccctcgt
     4501 caacaaaatg ctttttcact gcctaaaatt ttagatgtag atatttgaaa tagatttttt
     4561 ttcatttata ccagttttct ttatgatgat acagtgttaa aagaaaataa attacaattg
     4621 atctgtcatc catccttgct aagaatgtct gtttccatgg accaatctta caaaataagc
     4681 attcttgctc atgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtatccgtgc
     4741 atgtgtgggt gtgtgtgtca gtgtgtgtgc aaagctgacc tgtgtggggt tgtatttgga
     4801 tagaagcagt ttcatccgct gtccatcgtg taccagcctt tgttttccca gcatcagtgt
     4861 gcatcagtct gtccctcttg taatgtctct gctcttctca ccatctagtg gctcaggata
     4921 tttaggccag ctgaggtaaa gtaggatttt cacgcaatca cacattctag gacaccaact
     4981 ctttctacag gtcaatccct tccatatttt atgccctcag aacatgctaa accatggtca
     5041 acttggtagt ttccctttgg ggccaattac ttgaagtatc catagaagat gtaaactgct
     5101 ccccttattc cccttcaaac tgttttttgt ttatgtggca gggagcagta gacaattatg
     5161 ggctagatga ttaaaactga actctgaagc taacgttaga ctagtggtta acagagctaa
     5221 gaaataaggc taaccatttc agagagcgtg ggctgtgggt aaattagctt tgctctttag
     5281 atgcaagtga ctgaggccaa caggtgcctg gcaaatgtta actgttcttg gaaaaaaaat
     5341 aaaaaaataa ataatgaaag aaa
//
