LOCUS       NM_001107740            4732 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus catenin delta 1 (Ctnnd1), mRNA.
ACCESSION   NM_001107740 XM_001064294 XM_242062
VERSION     NM_001107740.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Xiao,Z.P., Zhao,J.L., Rong,W.L., Jiang,J.W. and Li,M.H.
  TITLE     Role of Vascular Endothelial-Cadherin and p120-Catenin in the
            Formation of Experimental Intracranial Aneurysm in Animals
  JOURNAL   World Neurosurg 128, e177-e184 (2019)
   PUBMED   30995547
  REMARK    GeneRIF: Decreased expression of p120-catenin was detected in
            intracranial aneurysm endothelium.
REFERENCE   2  (bases 1 to 4732)
  AUTHORS   Caldwell,J.M., Collins,M.H., Kemme,K.A., Sherrill,J.D., Wen,T.,
            Rochman,M., Stucke,E.M., Amin,L., Tai,H., Putnam,P.E.,
            Jimenez-Dalmaroni,M.J., Wormald,M.R., Porollo,A., Abonia,J.P. and
            Rothenberg,M.E.
  TITLE     Cadherin 26 is an alpha integrin-binding epithelial receptor
            regulated during allergic inflammation
  JOURNAL   Mucosal Immunol 10 (5), 1190-1201 (2017)
   PUBMED   28051089
REFERENCE   3  (bases 1 to 4732)
  AUTHORS   Jiang,Y., Liao,L., Shrestha,C., Ji,S., Chen,Y., Peng,J., Wang,L.,
            Liao,E. and Xie,Z.
  TITLE     Reduced expression of E-cadherin and p120-catenin and elevated
            expression of PLC-gamma1 and PIKE are associated with
            aggressiveness of oral squamous cell carcinoma
  JOURNAL   Int J Clin Exp Pathol 8 (8), 9042-9051 (2015)
   PUBMED   26464646
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4732)
  AUTHORS   Ranchoux,B., Antigny,F., Rucker-Martin,C., Hautefort,A.,
            Pechoux,C., Bogaard,H.J., Dorfmuller,P., Remy,S., Lecerf,F.,
            Plante,S., Chat,S., Fadel,E., Houssaini,A., Anegon,I., Adnot,S.,
            Simonneau,G., Humbert,M., Cohen-Kaminsky,S. and Perros,F.
  TITLE     Endothelial-to-mesenchymal transition in pulmonary hypertension
  JOURNAL   Circulation 131 (11), 1006-1018 (2015)
   PUBMED   25593290
REFERENCE   5  (bases 1 to 4732)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4732)
  AUTHORS   Chen,Y.M., Lee,N.P., Mruk,D.D., Lee,W.M. and Cheng,C.Y.
  TITLE     Fer kinase/FerT and adherens junction dynamics in the testis: an in
            vitro and in vivo study
  JOURNAL   Biol Reprod 69 (2), 656-672 (2003)
   PUBMED   12700184
REFERENCE   7  (bases 1 to 4732)
  AUTHORS   Katafiasz,B.J., Nieman,M.T., Wheelock,M.J. and Johnson,K.R.
  TITLE     Characterization of cadherin-24, a novel alternatively spliced type
            II cadherin
  JOURNAL   J Biol Chem 278 (30), 27513-27519 (2003)
   PUBMED   12734196
REFERENCE   8  (bases 1 to 4732)
  AUTHORS   Chauvet,N., Prieto,M., Fabre,C., Noren,N.K. and Privat,A.
  TITLE     Distribution of p120 catenin during rat brain development:
            potential role in regulation of cadherin-mediated adhesion and
            actin cytoskeleton organization
  JOURNAL   Mol Cell Neurosci 22 (4), 467-486 (2003)
   PUBMED   12727444
REFERENCE   9  (bases 1 to 4732)
  AUTHORS   Holsinger,L.J., Ward,K., Duffield,B., Zachwieja,J. and Jallal,B.
  TITLE     The transmembrane receptor protein tyrosine phosphatase DEP1
            interacts with p120(ctn)
  JOURNAL   Oncogene 21 (46), 7067-7076 (2002)
   PUBMED   12370829
REFERENCE   10 (bases 1 to 4732)
  AUTHORS   Golenhofen,N. and Drenckhahn,D.
  TITLE     The catenin, p120ctn, is a common membrane-associated protein in
            various epithelial and non-epithelial cells and tissues
  JOURNAL   Histochem Cell Biol 114 (2), 147-155 (2000)
   PUBMED   11052263
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            [WARNING] On Aug 9, 2024 this sequence was replaced by
            NM_001107740.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001064294.1, XM_242062.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..4732
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /note="catenin delta 1"
                     /db_xref="GeneID:311163"
                     /db_xref="RGD:1305643"
     exon            1..279
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            280..568
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     CDS             374..3172
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /note="catenin src; catenin (cadherin associated protein),
                     delta 1; p120 catenin"
                     /codon_start=1
                     /product="catenin delta-1"
                     /protein_id="NP_001101210.1"
                     /db_xref="GeneID:311163"
                     /db_xref="RGD:1305643"
                     /translation="MDDSEVESTASILASVKEQEAQFEKLTRALEEERRHVSAQLERV
                     RVSPQDANSLMANGTLTRRHQNGRFVGDADLERQKFSDLKLNGPQDHNHLLYSTIPRM
                     QEPGQIVETYTEEDPEGAMSVVSVETSDDGTTRRTETTVKKVVKTMTTRTVQPVPMGP
                     DGLPVDASAVSNNYIQTLGRDFRKNGNGGPGPYVGQAGTATLPRNFHYPPDGYGRHYE
                     DGYPGGSDNYGSLSRVTRIEERYRPSMEGYRAPSRQDVYGPQPQVRVGGSSVDLHRFH
                     PEPYGLEDDQRSMGYDDLDYGMMSDYGTARRTGTPSDPRRRLRSYEDMIGEEVPPDQY
                     YWAPLAQHERGSLASLDSLRKGMPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQH
                     LCYRNDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC
                     DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGW
                     EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI
                     GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEALPSVANSTGPHAASCFGAKKG
                     KGKKPTEDPANDTVDFPKRTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI
                     QNLCAGRWTYGRYIRSALRQEKALSAIADLLTSEHERVVKAASGALRNLAVDARNKEL
                     IGKHAIPNLVKNLPGGQQNSSWNFSEDTVVSILNTINEVIAENLEAAKKLRETQGIEK
                     LVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSS
                     HSYDDSTLPLIDRNQKSDKKPDREEIPMSNMGSNTKSLDNNYSTLNERGDHNRTLDRS
                     GDLGDMEPLKGAPLMQKI"
     exon            569..640
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            641..793
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            794..1329
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1793
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1977
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2095
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2096..2249
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2250..2318
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2319..2446
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2447..2597
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2598..2790
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2791..2905
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2906..2993
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            2994..3056
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            3057..3160
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
     exon            3161..4732
                     /gene="Ctnnd1"
                     /gene_synonym="Catns; P120"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctttggct gggtgcaact tccattttag gtgttggatc tgaggggaaa aagagagagg
       61 gaaagggaga gagagaacga gggcgagcaa gagggaggga gagagagcga gagagcgaga
      121 gaggccgaca gacacgaagg gagaggagaa aggcagaaag atcgtggaac gaggaagagg
      181 aagaggcggc gaacctcgct ggattcgtct ttctcagcac attggtgaag ctttgggttt
      241 gtttcttaaa aggactggct ttagaagtcc acatttgagt gtgaagtgag gggacctact
      301 cccttctttc tactccctct gtggtccacc ttacttttta tcctgccctg cggcggctcc
      361 tccccttacc ttcatggacg actcagaggt ggagtcgacc gccagcatct tggcctctgt
      421 gaaagaacaa gaggcacaat ttgagaagct gacccgggcg ctggaggagg agcggcgcca
      481 tgtgtcggcg caactggaac gcgtccgggt ctcaccacaa gatgccaact cactcatggc
      541 caacggcacc ctcacccgtc ggcatcagaa cggccggttt gtgggcgatg ctgaccttga
      601 gagacagaaa ttttcagatt tgaaactcaa cggaccccag gatcacaacc accttctgta
      661 tagcactatc cccaggatgc aggagccagg tcagatcgtg gaaacctaca cagaggagga
      721 ccctgaagga gccatgtctg ttgtttctgt ggagacctca gatgatggga ccactaggcg
      781 cacagagacc acagtcaaga aagttgtgaa gacgatgaca acgcggacag tgcagcctgt
      841 ccccatgggg ccagatgggc tgcctgtgga tgcctcagca gtctccaata actatatcca
      901 gaccttgggc cgtgatttcc gcaagaatgg caatgggggc cctggtccct atgtggggca
      961 ggcgggcact gcaactcttc ctaggaactt ccactatcct ccagatgggt atggccgaca
     1021 ctatgaagat ggttatccag gtggcagtga caactatggc agtctgtccc gagtgacccg
     1081 aattgaggag cggtataggc ccagcatgga gggctaccgg gcacccagta gacaagatgt
     1141 ctatgggccc cagccccagg ttcgagtagg tgggagcagt gtagatctgc atcgttttca
     1201 tccagagcct tatgggctag aggatgacca gcgcagcatg ggctatgatg acctagatta
     1261 cggcatgatg tctgattatg gtactgcccg tcggacagga acaccctcgg accctcgacg
     1321 acgcctcagg agctatgaag acatgattgg tgaagaggtg ccacctgatc agtactattg
     1381 ggctccttta gctcagcacg agcggggaag tttagcaagc ttggatagtc tgcgcaaggg
     1441 aatgcccccg cctccaaact ggagacagcc tgagctgcca gaggtgattg ccatgctagg
     1501 cttccgcttg gatgctgtta agtccaatgc agctgcatac ctgcagcact tatgctaccg
     1561 caatgacaag gtgaagactg atgtgcggaa gctcaagggc atcccgatat tggtaggatt
     1621 gttagaccat cccaaaaagg aagtgcacct cggagcctgt ggagctctca agaatatctc
     1681 ttttggacgt gaccaagata acaagattgc cataaaaaac tgtgatggtg ttcctgccct
     1741 ggtcagattg ctccgaaagg ctcgtgatat ggacctgact gaagtgatta ctggaaccct
     1801 gtggaatctc tcatcccatg attcaatcaa aatggagatt gtggaccatg cgctacacgc
     1861 cttgacagat gaagttatca ttccgcattc tggttgggag agagaaccta atgaagactg
     1921 taagccacgg catattgaat gggagtcagt gctcaccaac acagctggct gccttagaaa
     1981 tgtaagctcg gagaggagtg aagcccggcg gaaacttcgg gagtgtgatg gcctagttga
     2041 tgccctcatt ttcattgttc aggcagaaat tgggcagaag gattcagaca gtaaacttgt
     2101 ggagaattgt gtttgcctcc ttcggaactt atcatatcaa gttcatcgtg aaatcccaca
     2161 ggcagagcgt taccaggagg cacttcctag tgtggctaac agtactgggc cacatgctgc
     2221 cagttgcttt ggggccaaga agggcaaagg gaaaaagcct accgaggatc cagcaaatga
     2281 tacagtggat ttccctaaaa gaactagtcc tgctcggggc tatgaactct tatttcagcc
     2341 agaagtggtg cgaatataca tttcactcct taaggagagc aagacacctg ccatcctaga
     2401 agcctcggct ggagctatcc agaacttgtg tgctgggcgc tggacatatg gcagatacat
     2461 ccgctctgct cttcgtcaag agaaggctct ctctgccata gctgacctcc tgaccagtga
     2521 acacgagcga gtagtgaaag ctgcctctgg ggcactgaga aatctggctg tggatgctcg
     2581 gaacaaagag ttaattggca aacatgctat tcctaacttg gtaaagaatc tgccaggagg
     2641 tcaacagaac tcctcctgga atttctctga agacaccgtg gtctctatat tgaacaccat
     2701 caacgaagtt attgctgaga acttggaagc cgccaaaaag cttcgagaga cccagggtat
     2761 tgagaagctg gtgttgatca acaaatcagg gaatcgctca gaaaaagaag tccgggcagc
     2821 agctcttgtc ctgcagacaa tctggggcta taaggagctt cggaagccac tggaaaaaga
     2881 ggggtggaag aaatcagact tccaggtgaa tctaaacaat gcatctagaa gccagagcag
     2941 ccattcatat gatgatagca ctctccccct cattgaccgg aaccaaaaat cagataagaa
     3001 acctgaccgg gaagaaattc caatgagcaa tatggggtca aacacaaaat cattagataa
     3061 caactattcc acactgaatg agagaggaga ccacaacaga acactggacc gatctgggga
     3121 tttgggtgat atggagccat tgaagggagc acccttgatg cagaagattt agcaccactc
     3181 taccttctcc atatgggctt ataatatatt acttttattt tttggtggtg aaatggactg
     3241 atgatttttt tcctttcttc gctggactat tgtgccaact gccaggctga ctcctaccct
     3301 tgtagcccaa agtggctgct ttcatccgtg aattatcaac atcttccact gaagtttaat
     3361 tgtcctctcc tcccagcccc tacttccagt tttcccccaa gaaacctgac tcagttattt
     3421 gcatatcttg aacctgctgc agattagctc tttttgccag ccttccctgg acctcttggc
     3481 cttgtataga gagagggagg gagagtggaa ctctctactg gaatcattgg gaagaactga
     3541 aaattacacg ctgtctgttc agcattcagc attctgacaa actgatgact tttaatcaag
     3601 actatttttt ctggtgtggg ggaatttttt attttgctgt ggatggggaa gtgtgagtcc
     3661 ttcccttatg cagtggctgt ttttgaagcc atgaaggctg gaaacattgg cgcattccac
     3721 ctggcaaggg cctccagtaa gtgaagtact cccaccctcg gagtaagaac tcttcttcct
     3781 cctgtccgac cgaggcaggg accgcaaagg acctacagac tccatctcct ctgtcagctg
     3841 cagggcaacc ttggggtgct gtcctgatca aggctgtctc taaccctcct ctcctaccct
     3901 gtgataaaac tgctaacttg acctggccgt ttgcaagatg ctttgtaaaa aggagaatgc
     3961 cacggagccg ttggttgttg agaagaaaca aagattgtct gttgcgaaga taaacctcta
     4021 ggaggaacta gaaggaatgt acatgaagtg gttagtctga aactggcagg aagcttccag
     4081 gctggctttc cccagccttc cccacccatc tctcttcttc ctttataagc ttgtcctccc
     4141 tctcctcccc ctccctggat ttgttggcca actacaagac ttgtacataa ctcctccccc
     4201 tttcccttct aaggtaggag ctgccctggc tttgcctctt ctctgtgcct ttggcctggg
     4261 gtgcacctcc tccctctctt ccaggtgcct ttctttgcct ctgcagtctc atttctcatg
     4321 attttgcaag ttagattttg ttattttctt acccactgtt ggcccccagt agctgaagga
     4381 aagaagagaa gtggtaacct agggaacttc aagtccccac tgggggttgt taaagcctct
     4441 ggtgtatcac agcaggatgc tgctcaacag cttacagttg ggatgggtga agatcaaagt
     4501 gaggctgtta ggagggagcg ccgtgactga ctcctgagtt gtccccagat cccatcatct
     4561 ctgaaaggct acagggaatc aggccttgcc tccattgcac ccttactgtt atagtgaatg
     4621 gtatagcttg ggctagagaa gcagctacta tgtgggttca attttttaac tctttttcct
     4681 tatttgcttt ctttccttaa tctaaaagct ctattcaatg caactggaat tc
//
