LOCUS       NM_001024870            1920 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus catenin, beta like 1 (Ctnnbl1), mRNA.
ACCESSION   NM_001024870 XM_215906
VERSION     NM_001024870.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Chanarat,S. and Strasser,K.
  TITLE     Splicing and beyond: the many faces of the Prp19 complex
  JOURNAL   Biochim Biophys Acta 1833 (10), 2126-2134 (2013)
   PUBMED   23742842
  REMARK    Review article
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Huhn,S., Ingelfinger,D., Bermejo,J.L., Bevier,M., Pardini,B.,
            Naccarati,A., Steinke,V., Rahner,N., Holinski-Feder,E., Morak,M.,
            Schackert,H.K., Gorgens,H., Pox,C.P., Goecke,T., Kloor,M.,
            Loeffler,M., Buttner,R., Vodickova,L., Novotny,J., Demir,K.,
            Cruciat,C.M., Renneberg,R., Huber,W., Niehrs,C., Boutros,M.,
            Propping,P., Vodieka,P., Hemminki,K. and Forsti,A.
  TITLE     Polymorphisms in CTNNBL1 in relation to colorectal cancer with
            evolutionary implications
  JOURNAL   Int J Mol Epidemiol Genet 2 (1), 36-50 (2011)
   PUBMED   21537400
REFERENCE   3  (bases 1 to 1920)
  AUTHORS   Grote,M., Wolf,E., Will,C.L., Lemm,I., Agafonov,D.E., Schomburg,A.,
            Fischle,W., Urlaub,H. and Luhrmann,R.
  TITLE     Molecular architecture of the human Prp19/CDC5L complex
  JOURNAL   Mol Cell Biol 30 (9), 2105-2119 (2010)
   PUBMED   20176811
REFERENCE   4  (bases 1 to 1920)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 1920)
  AUTHORS   Andreasen,C.H., Mogensen,M.S., Borch-Johnsen,K., Sandbaek,A.,
            Lauritzen,T., Almind,K., Hansen,L., Jorgensen,T., Pedersen,O. and
            Hansen,T.
  TITLE     Studies of CTNNBL1 and FDFT1 variants and measures of obesity:
            analyses of quantitative traits and case-control studies in 18,014
            Danes
  JOURNAL   BMC Med Genet 10, 17 (2009)
   PUBMED   19245693
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1920)
  AUTHORS   Vogel,C.I., Greene,B., Scherag,A., Muller,T.D., Friedel,S.,
            Grallert,H., Heid,I.M., Illig,T., Wichmann,H.E., Schafer,H.,
            Hebebrand,J. and Hinney,A.
  TITLE     Non-replication of an association of CTNNBL1 polymorphisms and
            obesity in a population of Central European ancestry
  JOURNAL   BMC Med Genet 10, 14 (2009)
   PUBMED   19228371
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1920)
  AUTHORS   Conticello,S.G., Ganesh,K., Xue,K., Lu,M., Rada,C. and
            Neuberger,M.S.
  TITLE     Interaction between antibody-diversification enzyme AID and
            spliceosome-associated factor CTNNBL1
  JOURNAL   Mol Cell 31 (4), 474-484 (2008)
   PUBMED   18722174
REFERENCE   8  (bases 1 to 1920)
  AUTHORS   Makarova,O.V., Makarov,E.M., Urlaub,H., Will,C.L., Gentzel,M.,
            Wilm,M. and Luhrmann,R.
  TITLE     A subset of human 35S U5 proteins, including Prp19, function prior
            to catalytic step 1 of splicing
  JOURNAL   EMBO J 23 (12), 2381-2391 (2004)
   PUBMED   15175653
REFERENCE   9  (bases 1 to 1920)
  AUTHORS   Jabbour,L., Welter,J.F., Kollar,J. and Hering,T.M.
  TITLE     Sequence, gene structure, and expression pattern of CTNNBL1, a
            minor-class intron-containing gene--evidence for a role in
            apoptosis
  JOURNAL   Genomics 81 (3), 292-303 (2003)
   PUBMED   12659813
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097352.1.
            
            On Jun 17, 2005 this sequence version replaced XM_215906.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097352.1, SRR8487227.25886.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1920
                     /gene="Ctnnbl1"
                     /note="catenin, beta like 1"
                     /db_xref="GeneID:296320"
                     /db_xref="RGD:1563558"
     exon            1..82
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..1744
                     /gene="Ctnnbl1"
                     /note="NAP; nuclear-associated protein; beta catenin-like
                     1"
                     /codon_start=1
                     /product="beta-catenin-like protein 1"
                     /protein_id="NP_001020041.1"
                     /db_xref="GeneID:296320"
                     /db_xref="RGD:1563558"
                     /translation="MDVGELLSYQPNRGTKRPRDDEEEELKTRRKQTGPRERGRYRED
                     EATAAEDADDDKKRLLQIIDRDGEEEEEEEEPLDESSVKKMILTFEKRSYKNQELRIK
                     FPDNPEKFMESELDLNDIIQEMHVVATMPDLYHLLVELSAVQSLLGLLGHDNTDVSIA
                     VVDLLQELTDIDTLHESEEGAEVLIDALVDGQVVALLVQNLERLDESVREEADGVHNT
                     LAIVENMAEFRPEMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDEN
                     RELLGELDGIDVLLQQLSVFKRHNPSTAEEQEMMENLFDALCSCLMLSSNRERFLKGE
                     GLQLMNLMLREKKISRSSALKVLDHAMIGPEGADNCHKFVDILGLRTIFPLFMKSPRK
                     IKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNKFTENDSEKVDRLMELHFKYLG
                     AMQVADKKIEGEKHDIVRRGEIIDNDMEDEFYLRRLDAGLFILQHICYIMAEICNANV
                     PQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGDGRSPEFRETEQKRILGLLENF"
     exon            83..271
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            272..378
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            379..518
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            519..616
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            617..710
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            711..802
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            803..875
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            876..934
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1083
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1265
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1363
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1444
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1445..1582
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1655
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1656..1842
                     /gene="Ctnnbl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggagtaag tggaggcaac cagggtacac tgtgctgatt gggtccggaa ccatggacgt
       61 gggcgaactt ttaagctacc agcccaacag gggcacaaaa cgaccccggg atgatgagga
      121 agaagaactg aagactcgtc gaaaacaaac tggtcctcga gaacgaggtc gctatcgtga
      181 agacgaggcc acagcagctg aagacgcaga tgatgacaag aaaaggctgc tgcagattat
      241 tgacagggac ggcgaggaag aggaggagga ggaggaaccg ctggatgaaa gctcagtgaa
      301 gaagatgatc ctcacattcg aaaagcgatc gtacaaaaac caggagctgc ggatcaagtt
      361 tccagacaat ccagagaagt tcatggaatc cgagctggac ctcaatgata tcattcagga
      421 gatgcatgtg gtggccacca tgcctgacct gtaccacctt ctcgtggagc tgagcgctgt
      481 gcagtcgctt ctcggcttgc tgggacacga taatacagat gtgtccatag ctgtggtcga
      541 tctccttcag gagctgacag acatagacac cctccacgag agtgaagaag gagcagaagt
      601 tctcatcgat gcccttgtgg atggacaggt ggtcgcacta ttggtgcaga atctggagcg
      661 cctggatgag tctgtgaggg aggaggctga tggtgtccac aacaccctag ctattgtgga
      721 gaacatggcg gagttccgtc cagagatgtg cacggaggct gcccagcagg gactcctgca
      781 gtggctgttg aagaggctaa aggccaagat gccctttgat gccaacaagc tctactgcag
      841 cgaagtgctg gccatcctcc tccaggacaa tgatgaaaac agggaattgc tgggagagct
      901 ggatggaatc gatgtgcttc ttcagcagtt atccgtattt aaaagacaca accccagcac
      961 cgctgaggag caggagatga tggagaacct gtttgacgcc ctctgttcct gcttgatgct
     1021 cagctccaat cgggagcgct tcctgaaggg tgagggcctt cagctcatga acctcatgct
     1081 cagggagaag aagatctccc ggagcagtgc cctgaaggta ctggaccacg ccatgattgg
     1141 gccggaaggc gcagacaact gccacaagtt tgttgacatt ctgggcttac ggaccatctt
     1201 tccactcttc atgaagtctc cccggaagat caagaaggtg ggaaccacag agaaggaaca
     1261 cgaagagcat gtctgttcga tcctggcttc cctcctgcgc aacctgagag ggcagcagcg
     1321 gacccggctt ctgaataaat ttacggagaa cgacagtgag aaggtcgaca gactaatgga
     1381 gctgcatttt aaatatctag gtgcaatgca ggtggctgac aagaagattg aaggggagaa
     1441 acatgacata gtgcggcgtg gggagatcat agacaatgac atggaggacg agttctacct
     1501 gcggcgcctg gatgccggcc tcttcatcct acagcacatc tgctacatca tggcggagat
     1561 ctgcaatgcc aatgtccccc agattcgcca gcgagttcac cagatcctga acatgcgtgg
     1621 cagctccatc aagatcgtca ggcacatcat caaggagtac gcagagaaca ttggagatgg
     1681 ccggagccct gagttccgag agaccgagca gaagcgcatc ctgggcttgt tggagaactt
     1741 ctagaatgct aggcagagtg tgacagccac agacccttgg ctccctcctg gaaaccattt
     1801 ttacagttgt atggcgtgaa caaattaaag ttagttttgg taaaaaaaaa aaaaaaaaaa
     1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
