LOCUS       NM_001395740            4695 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus CTD small phosphatase like (Ctdspl), transcript
            variant 1, mRNA.
ACCESSION   NM_001395740 XM_039081297
VERSION     NM_001395740.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4695)
  AUTHORS   Dmitriev,A.A., Kashuba,V.I., Haraldson,K., Senchenko,V.N.,
            Pavlova,T.V., Kudryavtseva,A.V., Anedchenko,E.A., Krasnov,G.S.,
            Pronina,I.V., Loginov,V.I., Kondratieva,T.T., Kazubskaya,T.P.,
            Braga,E.A., Yenamandra,S.P., Ignatjev,I., Ernberg,I., Klein,G.,
            Lerman,M.I. and Zabarovsky,E.R.
  TITLE     Genetic and epigenetic analysis of non-small cell lung cancer with
            NotI-microarrays
  JOURNAL   Epigenetics 7 (5), 502-513 (2012)
   PUBMED   22491060
REFERENCE   2  (bases 1 to 4695)
  AUTHORS   Zhu,Y., Lu,Y., Zhang,Q., Liu,J.J., Li,T.J., Yang,J.R., Zeng,C. and
            Zhuang,S.M.
  TITLE     MicroRNA-26a/b and their host genes cooperate to inhibit the G1/S
            transition by activating the pRb protein
  JOURNAL   Nucleic Acids Res 40 (10), 4615-4625 (2012)
   PUBMED   22210897
REFERENCE   3  (bases 1 to 4695)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Aug 3, 2021 this sequence version replaced XM_039081297.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.31209.1,
                                           SRR22582419.16883.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-456               JAXUCZ010000008.1  127520499-127520954
            457-611             JAXUCZ010000008.1  127612003-127612157
            612-644             JAXUCZ010000008.1  127621143-127621175
            645-746             JAXUCZ010000008.1  127628071-127628172
            747-803             JAXUCZ010000008.1  127631244-127631300
            804-896             JAXUCZ010000008.1  127634772-127634864
            897-1082            JAXUCZ010000008.1  127638568-127638753
            1083-4695           JAXUCZ010000008.1  127641387-127644999
FEATURES             Location/Qualifiers
     source          1..4695
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..4695
                     /gene="Ctdspl"
                     /note="CTD small phosphatase like"
                     /db_xref="GeneID:301056"
                     /db_xref="RGD:1304841"
     exon            1..456
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     CDS             378..1208
                     /gene="Ctdspl"
                     /EC_number="3.1.3.16"
                     /note="isoform 1 is encoded by transcript variant 1; CTD
                     small phosphatase-like protein; CTD (carboxy-terminal
                     domain, RNA polymerase II, polypeptide A) small
                     phosphatase-like"
                     /codon_start=1
                     /product="CTD small phosphatase-like protein isoform 1"
                     /protein_id="NP_001382669.1"
                     /db_xref="GeneID:301056"
                     /db_xref="RGD:1304841"
                     /translation="MDGPAIITQVTNPKEDEARSPVAGEKASQRNISLKKQRGRSILS
                     SFFCCFRDYNVEPPPPSSPSVLPPLVEENGGLQKGDQRQVIPVPSPPAKYLLPEVTVL
                     DHGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQ
                     LFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKV
                     IIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDVYRMLHRLCSR
                     "
     exon            457..611
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     exon            612..644
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     exon            645..746
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     exon            747..803
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     exon            804..896
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     exon            897..1082
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..4695
                     /gene="Ctdspl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctctcccgc cctcccgccc tagctccgcg ctcgctcctt ctctccgtcg cccgctcgcg
       61 cttcccgcgg cgccgggcct cccgctccgc ctctccgagc gcggctctcc cgggcgcggc
      121 tccggggttc atgctgacga ggcggcggcc gcttcagccc agcggcggcg gcggcggcgg
      181 cggcggcggg agctggggcg cgggccccgg ccgcctctct cggagcgcgg ggccgggcgg
      241 cgggcgcgcc ccggcagcgg cggcgagcgc cccaccgcgc cgcgcccctg cgcgccccct
      301 acgccgcgcc tccgcgcgcc ccccgcgcct agcttgcggg gggccgggcc tgcgggcggc
      361 cggcgcggcg cgcacccatg gacggtccgg ccatcatcac ccaggtgacc aaccccaagg
      421 aagatgaggc ccggtcgccc gtcgcgggcg aaaaagcttc ccagcgcaac atcagcctaa
      481 agaagcagag gggtcggagt atccttagct ctttcttctg ctgcttccga gactacaatg
      541 tggaaccccc tccacccagc agccccagtg tgcttccgcc actggtggag gagaacggtg
      601 ggcttcagaa gggtgaccag aggcaggtca ttcccgtacc aagtccgcca gccaaatacc
      661 tccttccaga ggtgacggtg ctcgaccatg gaaagaaatg tgtggtcatt gatctagacg
      721 aaaccttggt gcacagttcg tttaagccca ttagtaatgc tgacttcatt gttccggttg
      781 aaatcgacgg aaccatacac caggtgtacg tgctgaagcg gccgcacgtg gacgagttcc
      841 tccagaggat ggggcagctc tttgagtgtg tgctcttcac tgccagcttg gccaagtacg
      901 cagaccctgt agctgacctc ctggaccggt ggggcgtgtt ccgggcccga ctcttcagag
      961 aatcctgtgt tttccatcga gggaactacg tgaaggacct gagtcgcctg ggacgggagc
     1021 tgagcaaagt gatcatcgtg gacaattctc ctgcctccta catcttccat cctgagaacg
     1081 cagtgcctgt gcagtcctgg ttcgatgaca tgacagacac ggagctgttg gacctcatcc
     1141 cgttcttcga gggcctaagc agggaagacg atgtctacag aatgctccac agactctgta
     1201 gcaggtagcc ctggccttgg cccgtctgtg cctgtgcact cactctggaa cccctggctc
     1261 aggggacccg cccggcctcc gctccccgag tggagcctgg gaagactcca cgctttgggc
     1321 cacaaggtga atgtctccat gcctacctgg tttgtttgtt tttttgtttt gttttttttt
     1381 tttaaagaac agaaacaact attttaaaga aaaaaacaaa acttttaata gatttcataa
     1441 gcggacgtgc attttaccag attcgatttt cttaaaacat accaaaaaga aaaaaagaaa
     1501 aagaagaaga aaaaaaaaaa aacccaagac tttgatatcc tttcaactga cctccccttc
     1561 ccagcagaca acctgtcctc ctcttcgtcc cggtttggag cagctgaccc aactcagaat
     1621 ctctttccta caagatgaag tgcctttttt gaatgttatt ttaagctgaa agttaatttt
     1681 tgtatacagc ctatttccaa acatctttta gtcttttaca gtcttagata cttactctga
     1741 gaagacgaaa caggaccatt ttatagaacc tggtagctgt gtgggggtgg gtggggaggg
     1801 tgtggtcagg gaaagcagtg ggtcacagga gcctgcctcc caacatgtct gactgtccac
     1861 tgtggcacgc atgggctctg gctcccactg acaggagctt cctcctgact gtcactgtct
     1921 gcactcgttt ctgaccagtc tggaatgtgc ctgccaatgg cctgatgctt taggaaacag
     1981 ccggttcctc tcgtgatggt ttctgaggtt gttaaaatac atcttgaggt tgccgggttt
     2041 tttttttttt gtttttttgt tgttttttct tgcccttggg aagtgacatc gtgtcgtcac
     2101 gtgtgctttt ccccacgact ccacgcgtct gtcccttgct gttctgttgt cactggtgtg
     2161 aggagaacag ttagaaaaaa ccctaaagcc cttgggtcgt gaagctcttc ctttctaaag
     2221 ctggggtaca cgtggggcta gctgctactg cactcctgcc accaaatgga aatgaccagc
     2281 ggctgttaca ctgttcctta gccactgtgc ctatgcttag aagacgctcg ccgctaagct
     2341 gcagactcgg acagggtcag aaacaggtgt cccaacccat caagcatggc atcgttcttt
     2401 ggacccagcc agtgccaaga atgctgaagg gcacgacggt ttaaaaaaaa aaaaaacaaa
     2461 aaaacaactg aagggccaaa gcactgctcg gatgtggcgt tcactgcagt caacatcaga
     2521 gcctgaggta gaactctcgg gtcttgcttg agaacctgtg gcctcagccg gcctccttgc
     2581 tggtgtggct ggctcaagtc tgccactcag cctctttgga agcacaccct cttcgagcca
     2641 agggttagag aagcctgccg ggatgggaga ctcatccctc caaaccaggg agaccggctt
     2701 ctccctggag cctggggctc tcctcccaac tgttcccagt tcggtgttta atggtgccat
     2761 gtttcgtcgc ttaaagaacc ctttttgtgt tggcaccgac gccttagtcc tccatgggtt
     2821 gggcctccct cagcagaact ctgctgggag tcgctggcat tgacaagatt tgaagtcagg
     2881 ggtcaaactt aaaaaaaatg ttttttcttt cattcacaaa acaatgaagc cagctactgg
     2941 gcctgtcttc cctcagtgct tggtctgggg aaccactgtg caatccgaac aggaatatat
     3001 gtaggggtca ttcagatcgc ctgactgagt gttctgaacc ctaagtaagc cctgtgccaa
     3061 ttaaaataga aaccgccccc ttgctcaaca ctcccacagg taacagcagt tacacagcag
     3121 atccccacac accataaacc cccgtggaaa accagtcgtt aaccaatccc actgccttaa
     3181 gtgtcctggg tgtttcagtg tctgctgtgt gttgagttcc acacagaacg aggcctggac
     3241 ggaacctcag atctttgcct gagcctcttt gtgtcggtgt cacggggcct tatttaaaag
     3301 gggcggggtg ggggcagaat ggactaaact tccagaatat ttcaggggaa ccgagcctag
     3361 aagtagtgct ctacttcagg caggttcgag gctaaccctt ggccttacag ctccggggct
     3421 gtgtgtcctc atgcactcct ggcagagctt accggtaggg agccctgttc ttgccaccac
     3481 aaacttggaa tgtcttgggc gggtggcaga gcttctgagg gttctgaaat ctgcacctta
     3541 tttgaccaag ctccaaaatg ccaatttttt cctttttttt taattaaaaa aaaattccgc
     3601 tttatgtaca taattgaaaa aaatctatat ttttaatcag ttacatgtaa atgaagcaat
     3661 agaactctaa caaggccgag aaaggagacg aatgttttga ggtttatttt cttaaggtaa
     3721 atacgggtat tgcttttaat tgtcagttta ttaaaatgtg ggcttgaaaa catcatcagc
     3781 cacttctctg tgccatatcc ttcccacgtt accaaaacac tcccatctcc ttagccaaaa
     3841 gaaacatctc acctcccaag tccctcggtc ctttcagccc caggttagga cccctctctt
     3901 agatgagtac cttcgatgta aaggtctggg acagcgtggc ttgggtgggt ggactccagc
     3961 ctacaccatt tgcttgacct caagtggggg gcttcctggg caccccgacc cctaatgacg
     4021 ttaatgttct tgtcttccgt ttgttctgga gtcctccatg ttggtctgtg gtctcctgca
     4081 ctcgctgttc gtaaacgata cattgtatct tcatctcccc acctgtcagc agatggtggt
     4141 gaatcctttg actgggggtg cgatgccgtg aggtgacttt gggggcatga ggactaggtc
     4201 gccagggtca cagcatttga agctggggta cgagacctat aagtgtgtag agcctggcag
     4261 ccttttacag ccctgtgttt cagagatggc ttcctaataa aatccagaaa cacacagccc
     4321 tattagtcag acactcgtga cgtttgtgcc tctgcttcta acggtgctgt gctgggcagc
     4381 cggcccgcca gggtttgagg agacggacgg atggcttacc gcgctcgtgg ttccctgtgc
     4441 aaaattgctg gctgcctctg ttcctatttt actgtaaatc tgaccatgcc tatcccggga
     4501 gtcgccctga ggataggtag cccccagcag tggtgacgtg ggtgcctggg gagttacagt
     4561 tttctgctgg acgtctgaat gtgccattcc agtaccactt gggagttact acatgttggg
     4621 atgtgcacga tgctcggggc aagtattgtc aaccagtgat ttccctcctg ccaaaaataa
     4681 actcgtcaaa ctgca
//
