LOCUS       NM_001398613            4319 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CTD small phosphatase 2 (Ctdsp2), mRNA.
ACCESSION   NM_001398613 XM_039080149
VERSION     NM_001398613.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4319)
  AUTHORS   Zhu,Y., Lu,Y., Zhang,Q., Liu,J.J., Li,T.J., Yang,J.R., Zeng,C. and
            Zhuang,S.M.
  TITLE     MicroRNA-26a/b and their host genes cooperate to inhibit the G1/S
            transition by activating the pRb protein
  JOURNAL   Nucleic Acids Res 40 (10), 4615-4625 (2012)
   PUBMED   22210897
REFERENCE   2  (bases 1 to 4319)
  AUTHORS   Yeo,M., Lin,P.S., Dahmus,M.E. and Gill,G.N.
  TITLE     A novel RNA polymerase II C-terminal domain phosphatase that
            preferentially dephosphorylates serine 5
  JOURNAL   J Biol Chem 278 (28), 26078-26085 (2003)
   PUBMED   12721286
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Dec 20, 2021 this sequence version replaced XM_039080149.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.19724.1,
                                           SRR22582416.1586250.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-343               JAXUCZ010000007.1  64690737-64691079
            344-489             JAXUCZ010000007.1  64702847-64702992
            490-528             JAXUCZ010000007.1  64704276-64704314
            529-630             JAXUCZ010000007.1  64704662-64704763
            631-687             JAXUCZ010000007.1  64705669-64705725
            688-780             JAXUCZ010000007.1  64706755-64706847
            781-966             JAXUCZ010000007.1  64706945-64707130
            967-4319            JAXUCZ010000007.1  64707287-64710639
FEATURES             Location/Qualifiers
     source          1..4319
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..4319
                     /gene="Ctdsp2"
                     /note="CTD small phosphatase 2"
                     /db_xref="GeneID:100365370"
                     /db_xref="RGD:2319209"
     exon            1..343
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             280..1092
                     /gene="Ctdsp2"
                     /EC_number="3.1.3.16"
                     /note="nuclear LIM interactor-interacting factor 2-like;
                     CTD (carboxy-terminal domain, RNA polymerase II,
                     polypeptide A) small phosphatase 2"
                     /codon_start=1
                     /product="carboxy-terminal domain RNA polymerase II
                     polypeptide A small phosphatase 2"
                     /protein_id="NP_001385542.1"
                     /db_xref="GeneID:100365370"
                     /db_xref="RGD:2319209"
                     /translation="MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRSIFKALLCC
                     FHTQHVSQSSSSTELTHKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEQDQGRIC
                     VVIDLDETLVHSSFKPINNADFIVPVEIEGTTHQVYVLKRPYVDEFLRRMGELFECVL
                     FTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTVILDNS
                     PASYIFHPENAVPVQSWFDDMADTELLNLIPVFEELSGADDVYTSLGQLRAP"
     exon            344..489
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     exon            490..528
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     exon            529..630
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     exon            631..687
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     exon            688..780
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     exon            781..966
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
     exon            967..4319
                     /gene="Ctdsp2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccatgttgga cccaaactga ggagcccgga gctgccaccg ggggatcggg gctgggggga
       61 ccgggggagc cgccgcctgg gccgcccgcc ctctgtgcag gccgcctccc ttcccgcccg
      121 gggaggaaac gcgagggggg ggatgtgaac agctgcggga gtcggagtct cgggagccgg
      181 agcccgacgg gcccccgccc aggcccccca gcccagcccg cctgcgcgcc cgcccgcgcg
      241 tcctcccgcc cagccagccc gggcccgcgg gattgttaga tggaacacgg ctccatcatc
      301 acccaggcga ggagggaaga cgccctggtg ctcaccaagc aaggcctagt ctccaagtct
      361 tcgcctaaga agccccgagg ccgcagcatc ttcaaggccc tcctgtgctg tttccacaca
      421 cagcatgtca gccagtcaag ctcttccact gagctcacac acaaggagga ggccaacacc
      481 atcgccaagt cggatctgct ccagtgtctc cagtaccagt tttatcagat ccctgggacc
      541 tgcctgctcc cagaggtgac agagcaagat caaggaagga tctgcgtggt cattgacctg
      601 gacgaaaccc ttgtgcatag ttcctttaag ccgatcaaca atgctgactt catagtgcct
      661 gtagagattg aggggaccac gcaccaggta tatgtgctca agaggcctta cgttgatgag
      721 ttcctgaggc gaatggggga gctctttgaa tgtgttctct tcactgccag cttggccaag
      781 tatgctgacc ctgtgacaga tctgctggac cggtgtgggg tgttccgggc ccgtctgttc
      841 cgggagtctt gtgtgttcca ccagggctgc tatgtcaagg accttagccg cctgggaagg
      901 gacctgagga aaactgtcat cctggacaac tcccctgcgt catacatctt ccacccagaa
      961 aacgcagtgc ctgtgcagtc ctggtttgat gacatggcag atacagagtt gctgaacctg
     1021 attccagtgt tcgaggagct gagtggagcg gatgatgtct acaccagcct tgggcagctg
     1081 cgggcccctt agccttcctg ctccaagaaa tggccacccc aacaggggat ttgctacact
     1141 gtgcctttgt gatcaacctg actgtcaggg tctgcaagta cccagggcat gctagacaag
     1201 agctgtatgg caggtcacat gcagagcagg aaatcagact gagacccaga gctctctgaa
     1261 ccctgtgtct cccaagtgtg cgtgtgggtg ggtgtgtgtg tgtgcgcatg catgtgcatg
     1321 tgcccgtcca gtaaactatg gtccacggtg cccagtggcc agtagggggc gaaactgaaa
     1381 gatcaagact cgacccaagt ctcttgtctc ttttcctgct gccctgggag ctgctaagtg
     1441 tcacagccag gcaactgttg tagactcccc tgccaaacca tggcctttcc tcaacatcac
     1501 caggcctgtg ccaaggagaa gggagaggcc agaggctgct ttcagatgcc cagccacaca
     1561 cctagaaatc tagccagcag ctgcagacgt ttgggaagat gaggacatgt tcacagaccc
     1621 accaggtcct gtgtcctatg gactgcacct gactccagca gaattgcttc tctgtctcca
     1681 ggctccagta ccaggccagc ctcctcactc ccaagccata gtcttactcc catgggaaag
     1741 gaggtcttct ctctgtccta ggagaggaca gctgatttct gttcttttaa ctcttaaagt
     1801 tctctttata aacatggagt ggtttgtatc cagccgagct gcggtcatgg gcctgagatg
     1861 cttgtgggac gtgctgggta cagggaaaac gccaatgttc aatgcacgat gtctgtctcc
     1921 tggcttgtag atcccaaaag tgctcttcag ggattctgtg ctagctgatg caaggccatt
     1981 agctccaaag gctggggagg gctaggctgt cctccccagt gtcctgtcct ggctaactct
     2041 tgcctgttct ggcctttatc cttcctggct gtttctctcc ctccagggcc ttgggagaac
     2101 cactttccca agttgtaggt tttgctgttc ttgatttgcc aaatgcttgc tcctgcttgt
     2161 ggagatgggg ctgagcgttc tccagccctg tgctcaggca tctcccagct ctcacccttt
     2221 atgctttaag attagtgagt cacagcggaa aactaacagg aagtgtcgct gttactggga
     2281 acacaggggc ccccacctca gcatcactgc cttaactgag tcctgcccag ggttaggtgg
     2341 gattctcctc cctccctctg aggttggtgg gggttcctac cccatctctg cttcccctgg
     2401 aggtgggtca gcatttgtgg gttggtttca ggtgtggtca cctcccgctc aggagtcaca
     2461 atattttcta gtttccatac acgaggtcct gcctcaagtt cgagaaagcc tctgttggag
     2521 ctgggtattc tgagtggaag ctggctgaca tccttccagc attatgcaga cttcttcctt
     2581 ggcccaaggc tgagaagcct tgtctttcac ttctgtgaca aagacatgcc atttccccag
     2641 catcatttgc tgatgtctat ggggtcctcc caaggtgagg tgagggctcc aggtgctagc
     2701 caggaatgtg ggagctcggc tggcttcagg tccagggcct ggtctcactg ccatcctaat
     2761 actgcaggag ggggtcttct cacaaggcta ctctgagggc tagtcttaac taagcaataa
     2821 gagcctcaga gttgattgaa ggtccctttc tgacttcttg gttctccatg cttacctgtg
     2881 accaaagccc agtgtggctt catgggagct cctgcagctt ctccatgaaa ccccaactct
     2941 ctaggcctgt ctgccaccac aatccttctt gccacctgca gtctgctaca gagatgctac
     3001 accaactcct cttctcagac ctaatcagga tctaccgcag actgagtcag ctaggtggcg
     3061 tatcttgcta tccctgtgct agttccgtgg tttagaggca agtgatgcag gggagaagag
     3121 tagggcaaga ctgagaggag ccagctcctc ctcaagtctg tcaccccagt gcacactgct
     3181 tttcaggagt cagtagacca ctgggcccag tgtcagcatc cactcaaagc catgccagga
     3241 atctgccccc tgccaggttc agctctttaa ggtgcctctt cagggacaca atgtgtgtct
     3301 gattgggctt ctaatcaaaa gcctgatgtt cctgtccctc ttataggggg agctttggac
     3361 acaggaccag tttgataaag ggccaggtaa gggtttccac tctgcacatt gtagagggga
     3421 caccgtaggc ccatgggtcc ctaattaagg aagttgagtg aattgccttc atttaaccag
     3481 ggacctgtct tactccctcc tgcctcccaa agatttttgt gtaattgtat aaccccctct
     3541 gttaacagtg gctcagaaaa gctttgtact aaaagcatgg gaccctcaca gcagccattc
     3601 ccggggaaat ggccctgccc tgccctgttc agaggcttct tggcagtgcg gcccatttgt
     3661 gctgtcctgc atccagtgta tcagcctagc taagtgtgag ccatttccat ttggggctac
     3721 tcttcagttc cttttttaaa atagcttagc cctctccctt acctctaccc ctagacaggg
     3781 tttcatgaat tccaagcagg ggcctcaact cacatttagc caggaatgat cttgaactga
     3841 cctcctgagt gctggggtta caggtgtgat caccttgctg ctttaggagg tgctgggaac
     3901 aacccagggc atcgtgtgtg ttaagcacac actcccagct aagctacatc cccagtccct
     3961 ctttctagaa aacatcatta gttaaatata ttcaggggag aagaggtcac aggtctggcc
     4021 agctgcccca tcctttagtg cagggtcagc tcccagaact gctctgctct gctctgcaag
     4081 ctggtgattc tccttacctg tgattactcc agatctgcct atttccaaga tgccatttga
     4141 aggggagggg tctgcttccc actgtgactg ggctatggga tccttgacca ccttgcttca
     4201 tgatttgata catttgttgt attcaaaaac ttgaactgta ggatgccatt aagagtctgt
     4261 ttatattttt ggaatatttg tattacaatt gttttaataa aggccggttt aaaaaccta
//
