LOCUS       NM_001128079            2323 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CTD small phosphatase 1 (Ctdsp1), mRNA.
ACCESSION   NM_001128079 XM_001057695 XM_343588
VERSION     NM_001128079.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Jeronimo,C., Bataille,A.R. and Robert,F.
  TITLE     The writers, readers, and functions of the RNA polymerase II
            C-terminal domain code
  JOURNAL   Chem Rev 113 (11), 8491-8522 (2013)
   PUBMED   23837720
  REMARK    Review article
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Egloff,S., Dienstbier,M. and Murphy,S.
  TITLE     Updating the RNA polymerase CTD code: adding gene-specific layers
  JOURNAL   Trends Genet 28 (7), 333-341 (2012)
   PUBMED   22622228
  REMARK    Review article
REFERENCE   3  (bases 1 to 2323)
  AUTHORS   Zhu,Y., Lu,Y., Zhang,Q., Liu,J.J., Li,T.J., Yang,J.R., Zeng,C. and
            Zhuang,S.M.
  TITLE     MicroRNA-26a/b and their host genes cooperate to inhibit the G1/S
            transition by activating the pRb protein
  JOURNAL   Nucleic Acids Res 40 (10), 4615-4625 (2012)
   PUBMED   22210897
REFERENCE   4  (bases 1 to 2323)
  AUTHORS   Visvanathan,J., Lee,S., Lee,B., Lee,J.W. and Lee,S.K.
  TITLE     The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway
            during embryonic CNS development
  JOURNAL   Genes Dev 21 (7), 744-749 (2007)
   PUBMED   17403776
REFERENCE   5  (bases 1 to 2323)
  AUTHORS   Yeo,M., Lin,P.S., Dahmus,M.E. and Gill,G.N.
  TITLE     A novel RNA polymerase II C-terminal domain phosphatase that
            preferentially dephosphorylates serine 5
  JOURNAL   J Biol Chem 278 (28), 26078-26085 (2003)
   PUBMED   12721286
REFERENCE   6  (bases 1 to 2323)
  AUTHORS   Schmekel,K., Meuwissen,R.L., Dietrich,A.J., Vink,A.C., van
            Marle,J., van Veen,H. and Heyting,C.
  TITLE     Organization of SCP1 protein molecules within synaptonemal
            complexes of the rat
  JOURNAL   Exp Cell Res 226 (1), 20-30 (1996)
   PUBMED   8660935
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161976.1.
            
            On or before Jun 4, 2008 this sequence version replaced
            XM_343588.3, XM_001057695.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161976.1, EV775307.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q33"
     gene            1..2323
                     /gene="Ctdsp1"
                     /note="CTD small phosphatase 1"
                     /db_xref="GeneID:363249"
                     /db_xref="RGD:1305629"
     exon            1..185
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..904
                     /gene="Ctdsp1"
                     /EC_number="3.1.3.16"
                     /note="CTD (carboxy-terminal domain, RNA polymerase II,
                     polypeptide A) small phosphatase 1"
                     /codon_start=1
                     /product="carboxy-terminal domain RNA polymerase II
                     polypeptide A small phosphatase 1"
                     /protein_id="NP_001121551.1"
                     /db_xref="GeneID:363249"
                     /db_xref="RGD:1305629"
                     /translation="MDSSAVITQISKEEARGPLRGKGDQKSAVSQKPRSRGILHSLFC
                     CVCRDDGEPLPAHSGAPLLVEENGAIPKHTPVQYLLPEVKAQDSDKICVVIDLDETLV
                     HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYAD
                     PVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN
                     AVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS"
     exon            186..334
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
     exon            335..439
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
     exon            440..496
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
     exon            497..589
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
     exon            590..775
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
     exon            776..2298
                     /gene="Ctdsp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcggggatc cctccctccc accctcccct cccccccgcg ccccgattcc ggcccgagcc
       61 gggggggagg ccgggcgccg gggccagagt ccggccggag cggagcgcgc cgggccccat
      121 ggacagctcg gccgtcatta ctcagatcag caaggaggag gcgcggggcc cgctgcgggg
      181 caaaggtgac cagaagtcag cagtttccca gaagccccgg agtcggggca tcctccactc
      241 tctcttctgc tgtgtctgcc gagatgatgg ggagcccctg cctgcccaca gtggggctcc
      301 cctgctggtg gaggaaaatg gcgccatccc taagcatacc ccagtccagt acctgcttcc
      361 cgaggtcaag gcccaggact cagacaagat ctgcgttgtc atcgacctgg acgagaccct
      421 ggtgcacagc tccttcaagc cagtgaacaa cgctgacttc atcatcccgg tggagattga
      481 tggagtggtt caccaggtct atgtactgaa acggccccac gtagatgagt tcctacagcg
      541 aatgggcgag ctctttgagt gtgtgttgtt cactgccagt cttgccaagt acgcagaccc
      601 tgtagctgat ctgctggaca agtggggagc cttccgtgcc aggctgtttc gagagtcctg
      661 tgtcttccat cggggaaact acgtaaagga cctgagcagg ctgggccgag acctgcggcg
      721 ggtgctaatc ttagacaact cacccgcctc atacgtcttc catccagaca atgccgttcc
      781 agtggcctcg tggtttgaca acatgagtga cactgagtta cacgatctct tacccttctt
      841 tgagcaactc agccgcgtcg acgacgtata ctcagtgctc agacagccta ggcccgggag
      901 ctagtgaggt gtcttggggc caggacctgc ccctcggcaa ggcccaccac acctcttgcc
      961 agcagactgt gctgttaaca aaacccgagg gctatgtcat gttcatggcc ctggggaaga
     1021 ggtgtctccc ctgtcatgtt gcatggagga cagtgagccc ttgggtccct atgtcagtgc
     1081 cttcaaattt cttcccctct tctcagggga cctggggggc ctggcctgct gctccccact
     1141 tctgtcttct cttctccaca ccgccaggtt tctctgctgc caaattgggc ctcttagccc
     1201 cagttctgct ttgggggggg gagggatagg gtttttgctg ccccttccct gtctgggaac
     1261 agtggacacc caagtgcctt gtatagaacc ctctttactg gtcagctttt cccagatcta
     1321 ggctgacctg agaggaacca attcctcccc ttcctctcct ccctcttggg ttgatggtgc
     1381 cccgccagtg tctacatggg agggagaaga agaaagtcta ttacagtaca cttgtacaag
     1441 agctggggac cttcatcagg gaggaatgct cccggtccag cttctccaag gctgctccat
     1501 atatccctta agccccgtct ccccaaagcc ctggggcttg gcaggacgcc cccacggtgc
     1561 catataaata tgtatatgtg tatatagatt tttaagggaa ggagagagga aagggtggga
     1621 acattcttcc cttgaccctt ccctgggccc agaaattggg ggagggaggg aaaggatttt
     1681 tacattttta aaatgactat tttctgaatg gaacaagctg ggctaagggg tcaggcccgg
     1741 tcttctgtct gctcccaacc cttttacttt attcattcaa aaaacattta ttgagtacct
     1801 tcggtgccca gcagtgagct agtcccaccg gcttagtggg aggagggtct ctgcttcatc
     1861 attggtgcct catccctaaa ccccacactt cacgtgcctt tagaggatcg acaggaggtg
     1921 gaaccttttt gtgggcctca ggaggtctcc aaactttacc aagctggctc ctcctgtccc
     1981 aactcatcct ccttccctgt actccgtgca gcctcctcca tggccccctg ctggctgggg
     2041 gcagctccca ggtctctgcc aactctgact tctctgtttt taaagcccct ccccatacct
     2101 gctgagtctg gagttcaagc ccttaggctc tctccccaga ttatgagggt taagtggacc
     2161 cacaaacaag tgccaaggga gttggtgaag ggagaggata tggttggccg ggattagatg
     2221 accttcctaa ttaagtgcct tctctgtgac cgagcacctc cgtgtgataa gaactaaaga
     2281 gaaagctaga ccccctacaa aaaaaaaaaa aaaaaaaaaa aaa
//
