LOCUS       XM_006246644            1880 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CTD nuclear envelope phosphatase 1
            (Ctdnep1), transcript variant X4, mRNA.
ACCESSION   XM_006246644
VERSION     XM_006246644.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246644.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246644.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1880
                     /gene="Ctdnep1"
                     /gene_synonym="Dullard"
                     /note="CTD nuclear envelope phosphatase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 34 ESTs, 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 206 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287447"
                     /db_xref="RGD:1310172"
     CDS             673..1503
                     /gene="Ctdnep1"
                     /gene_synonym="Dullard"
                     /codon_start=1
                     /product="CTD nuclear envelope phosphatase 1 isoform X4"
                     /protein_id="XP_006246706.2"
                     /db_xref="GeneID:287447"
                     /db_xref="RGD:1310172"
                     /translation="MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTETLAIMKGYL
                     ECRDCLDEPKHLWVLSLKLFSKVIQYQTVRYDILPLSPLSRNRLAQVKRKILVLDLDE
                     TLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELV
                     VFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILD
                     NSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
                     "
ORIGIN      
        1 gccctttggg cggtaaaatg gcgcctgtca gagtgggaag cccagctgca gaggctgcag
       61 ccccgctcct cagcggctaa gagatcctga cctcggggag ggggaggcca ctccggccca
      121 gcgctccgcg ccttttggct ccccctcccc ttccttccca gctcctgcgc tcaggggccc
      181 caagagtcgc ggcagcccat cgcgcgccgc cgcccccgcc cgcccccttc ccggggcaga
      241 cccctagcgc gcctgcgcag agggccaccc ttcgcttccc ccttcccctc ccatctccct
      301 ccctcccttc tccctagccc cctcccccac tgccccctcc cccaattctc catccccttc
      361 cctcctggtc tcagaggacc ctgtcctagc ccgacctgtt tcggcctgca gcccacgcga
      421 agtcgtcggt gccacttccc gctcatgtgg gcccccgcgg gctgcccacg ccagtccccc
      481 agttcccggt tccgctgggc tttccctttg ctgggggtgg ctttctgagc cacccactcc
      541 gtgctcatct ctgcagcctc tcctgccgct cggggccccc gttccccctc cctgcggcgg
      601 ggggctgccc ccggggggct ggcggagctg ggccgcgggg gccccggggc cggcggtgcc
      661 ggggtcatcg ggatgatgcg gacgcagtgt ctgctggggc tgcgcacgtt cgtggccttc
      721 gccgccaagc tctggagctt ctttatttac cttttgcgga ggcagatccg cacggagact
      781 ctagcaatta tgaagggata cctggagtgt agagactgtt tggatgaacc caagcatctc
      841 tgggttctct ccctcaagct tttctccaag gtaattcagt atcaaactgt tcgatatgat
      901 atccttccct tatctccttt gtcccggaat cgactagccc aggtgaagag gaagatcctg
      961 gtgctggatc tggatgaaac ccttattcat tctcaccacg atggggtcct gaggcctaca
     1021 gtgaggcctg gaacacctcc tgatttcatc ctgaaggtgg taatagacaa acatcctgtc
     1081 cggttttttg tacataagag accccatgtg gatttcttct tagaagtggt aagccagtgg
     1141 tatgagcttg tggtgtttac agcaagcatg gaaatttatg gctctgctgt ggcagataaa
     1201 ctggacaata gcagaagcat tcttaagagg agatactaca gacagcactg cactttggag
     1261 ttgggcagct acatcaaaga cctctctgtg gtccacagtg acctttccag catcgtgatc
     1321 ctggacaact cccctggggc ttacaggagc cacccagaca atgccatccc catcaaatcc
     1381 tggttcagtg accccagtga cacagccctt ctcaaccttc tcccaatgtt ggacgccctc
     1441 aggttcactg ctgatgtccg atcggtgctg agccgaaacc ttcaccaaca taggctctgg
     1501 tgacagctgc tccccctcca cctgagttgg ggtggagggg aaagggaggg agaactcttc
     1561 ggacggccgt ctgtagccct gtccagtgtg aggactgcct gggcagagtc tgctcctccc
     1621 gcccctctct gccctgggag ccctacactc cgcttacgga gtcaggatgg acacatgggc
     1681 cagactgtga agcagcctca ctctttgtgt tcacactccg tggaaatgcc agactgggac
     1741 aggcgaaggc ctaggggaac cgaaaccgtc tggtgaagag gcaggactgg ccagagtgac
     1801 agacatatcc cagaggctca aaagaagcca attcaacttt gttgtgattt gattttttaa
     1861 aaactcttat acaaaactga
//
