LOCUS       NM_001322486            3233 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CCCTC-binding factor like 1 (Ctcfl1), mRNA.
ACCESSION   NM_001322486
VERSION     NM_001322486.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3233)
  AUTHORS   Nguyen,P., Bar-Sela,G., Sun,L., Bisht,K.S., Cui,H., Kohn,E.,
            Feinberg,A.P. and Gius,D.
  TITLE     BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4
            histone dimethylation and gene expression
  JOURNAL   Mol Cell Biol 28 (21), 6720-6729 (2008)
   PUBMED   18765639
REFERENCE   2  (bases 1 to 3233)
  AUTHORS   Sun,L., Huang,L., Nguyen,P., Bisht,K.S., Bar-Sela,G., Ho,A.S.,
            Bradbury,C.M., Yu,W., Cui,H., Lee,S., Trepel,J.B., Feinberg,A.P.
            and Gius,D.
  TITLE     DNA methyltransferase 1 and 3B activate BAG-1 expression via
            recruitment of CTCFL/BORIS and modulation of promoter histone
            methylation
  JOURNAL   Cancer Res 68 (8), 2726-2735 (2008)
   PUBMED   18413740
REFERENCE   3  (bases 1 to 3233)
  AUTHORS   Jelinic,P., Stehle,J.C. and Shaw,P.
  TITLE     The testis-specific factor CTCFL cooperates with the protein
            methyltransferase PRMT7 in H19 imprinting control region
            methylation
  JOURNAL   PLoS Biol 4 (11), e355 (2006)
   PUBMED   17048991
REFERENCE   4  (bases 1 to 3233)
  AUTHORS   Hong,J.A., Kang,Y., Abdullaev,Z., Flanagan,P.T., Pack,S.D.,
            Fischette,M.R., Adnani,M.T., Loukinov,D.I., Vatolin,S.,
            Risinger,J.I., Custer,M., Chen,G.A., Zhao,M., Nguyen,D.M.,
            Barrett,J.C., Lobanenkov,V.V. and Schrump,D.S.
  TITLE     Reciprocal binding of CTCF and BORIS to the NY-ESO-1 promoter
            coincides with derepression of this cancer-testis gene in lung
            cancer cells
  JOURNAL   Cancer Res 65 (17), 7763-7774 (2005)
   PUBMED   16140944
REFERENCE   5  (bases 1 to 3233)
  AUTHORS   Loukinov,D.I., Pugacheva,E., Vatolin,S., Pack,S.D., Moon,H.,
            Chernukhin,I., Mannan,P., Larsson,E., Kanduri,C., Vostrov,A.A.,
            Cui,H., Niemitz,E.L., Rasko,J.E., Docquier,F.M., Kistler,M.,
            Breen,J.J., Zhuang,Z., Quitschke,W.W., Renkawitz,R., Klenova,E.M.,
            Feinberg,A.P., Ohlsson,R., Morse,H.C. 3rd and Lobanenkov,V.V.
  TITLE     BORIS, a novel male germ-line-specific protein associated with
            epigenetic reprogramming events, shares the same 11-zinc-finger
            domain with CTCF, the insulator protein involved in reading
            imprinting marks in the soma
  JOURNAL   Proc Natl Acad Sci U S A 99 (10), 6806-6811 (2002)
   PUBMED   12011441
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000003.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1508004.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-904               JAXUCZ010000003.1  182308369-182309272 c
            905-1440            JAXUCZ010000003.1  182307357-182307892 c
            1441-1663           JAXUCZ010000003.1  182306260-182306482 c
            1664-1834           JAXUCZ010000003.1  182302448-182302618 c
            1835-1968           JAXUCZ010000003.1  182301355-182301488 c
            1969-2089           JAXUCZ010000003.1  182297293-182297413 c
            2090-2239           JAXUCZ010000003.1  182296814-182296963 c
            2240-2400           JAXUCZ010000003.1  182295036-182295196 c
            2401-2583           JAXUCZ010000003.1  182292299-182292481 c
            2584-2704           JAXUCZ010000003.1  182287695-182287815 c
            2705-3233           JAXUCZ010000003.1  182286637-182287165 c
FEATURES             Location/Qualifiers
     source          1..3233
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..3233
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /note="CCCTC-binding factor like 1"
                     /db_xref="GeneID:100360757"
                     /db_xref="RGD:2321501"
     exon            1..904
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1440
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     CDS             916..2853
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /note="CCCTC-binding factor (zinc finger protein)-like"
                     /codon_start=1
                     /product="transcriptional repressor CTCFL"
                     /protein_id="NP_001309415.1"
                     /db_xref="GeneID:100360757"
                     /db_xref="RGD:2321501"
                     /translation="MAAAEVPVASGHFTQIKEQKLKPGDLEEEKEEGGVQRGEAQEGA
                     VEEAEAEPQELPSRAPVESDRRILTLQTLHLTSQDVHLQGLGWLSVPHSEELSMTVPQ
                     AESILQLPSVLWLDPEPPLSLQHCVTVSIPEELYPPEMLELRHFHLLRENVPEDDEEN
                     QESTSNLEESTAPKKPEEDEKDQLLPQGGTDKKEERFLFVEMKPREGKDEIVLTISHL
                     SLEEQQDPPAAKHTSAPGAKAAKPKPQRQTKGRPRTFQCDTCPFTSSKLSTFNRHIKI
                     HSDERPHLCHLCLKSFRTVTLLRNHVNTHTGTRPYKCGDCDMAFVTSGELVRHRRYKH
                     THEKPFKCSLCKYASVEASKLKRHIRSHTGERPFQCSQCAYASKDTYKLKRHMRTHSG
                     EKPYECPTCHARFTQSGTMKIHIAQKHGENVPKHECPHCATIIARKSDLRVHLRNLHG
                     HSPEEIKCRYCPAAFHERYALLQHQRTHKNEKKFKCKQCDYACKQERCLTAHMRTHTG
                     ERPFSCLTCNKHFRQKQLLTVHLRKYHDPSFVPSVHLCLKCGKGFSRWSNLQRHRKKC
                     DPEHEKSAPSRNGRPVTRAQASEEGAEHDKDVATQESATSGEPRPPEEQALGHQGESA
                     AGSPSPDQGLTCEMIFNMMDK"
     exon            1441..1663
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1834
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            1835..1968
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            1969..2089
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            2090..2239
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            2240..2400
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            2401..2583
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            2584..2704
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
     exon            2705..3233
                     /gene="Ctcfl1"
                     /gene_synonym="Ctcfl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccacggagg tccaggttcc ctgtcctcca tctccgcacc tctgccctga ctccacccat
       61 cggatggcac ccaggggctg tgtgataaag gctgaaggtg gtttgaagct aaacacaagg
      121 tcgaaggcaa cacacttgag gcccgctaat atatttttag gtatgtttta taactttcca
      181 atattctaaa atgccaatgt aattttgttt tccatcgggt tccctctggg ctccttgccc
      241 cttctgtctc ccctgtcccc ttacagctcc tttaccactg cgcccttgag gtttgtggcc
      301 ctccagtttg catcaggagg gtcttctcag accccattcg accatccagc actccctaca
      361 cacaggcttc ctcgactctt gcaggacctt cctctcccag cactcttgcc ttgttggtcc
      421 acccatagtc tccaggtcgg ttcccctcca cttcgtcctt aagttactcc agcgccccct
      481 ctggacctct ccttgacctt cctgtccatc atccgctgcc atgcctccag ttcttcctcc
      541 aggaccactc ctcactgtcc atcatcctcc tgtaggactc cagcgccccc tcaggactcc
      601 atctctccct atctgtccat catcgccccc aagactccac cccctcccag gattccattt
      661 tttcttctct gtccatcata cccccccaag gactccagcg cccccttggg gtcctgtgtc
      721 ccttactcta ctccatctcc accatcttcc tctccttggc tccacccctt tcccgccagc
      781 acctgcgcag ggctctcgtc gtcttcgagg aaggtggtgg cagctgcctc tgcacgaaga
      841 gcaacttagc acgaggtggc aaggtgacag ccacgcggtc aacagtccag gccctgcctc
      901 cgcggggaca tcaccatggc tgctgctgag gtccctgttg cttctgggca cttcacccag
      961 atcaaagagc agaagttgaa gcctggagac ctggaagagg aaaaagagga gggtggggta
     1021 caaagagggg aagcccagga gggagctgtc gaggaggccg aagccgagcc ccaggaactg
     1081 ccttcgaggg ccccagtgga gagcgatagg cggatcctga ccctgcaaac cctgcacctg
     1141 acgtcccaag atgtgcacct acaggggctg ggatggctga gcgtgccaca ctcggaggag
     1201 ctttcaatga cggtacctca ggccgaaagc atactgcagc tgccgtctgt gctgtggctg
     1261 gacccagagc ccccgctcag ccttcagcac tgcgtgaccg tcagcatccc cgaagagctg
     1321 tacccaccag agatgctgga gctgagacat tttcacctgc tgcgcgagaa cgtgccggag
     1381 gatgacgagg agaaccaaga gtcaacgtcg aacttggagg aaagcacagc cccgaagaag
     1441 ccagaagaag atgaaaagga ccagctcttg ccccagggag ggacagataa gaaagaagag
     1501 agattcctct ttgtggaaat gaaaccaaga gaagggaaag acgaaatcgt tctgaccatt
     1561 tcccacctca gcctggagga acaacaagat ccaccagctg caaagcacac cagtgcgccg
     1621 ggagccaagg ccgcaaaacc aaaacctcaa aggcagacca agggaagacc ccggactttc
     1681 cagtgcgaca cctgcccgtt cacttcttcc aaactctcaa ctttcaaccg tcacatcaaa
     1741 attcacagcg acgagaggcc gcacctgtgc cacctgtgcc tgaagtcttt ccggaccgtc
     1801 actctcctcc ggaaccatgt caacacccat acagggacca ggccctacaa gtgcggggac
     1861 tgtgacatgg cgtttgtcac cagcggagag ctcgtcaggc acagacgtta caaacacacg
     1921 cacgagaaac ccttcaagtg ctccctgtgc aagtacgcca gcgtcgaggc aagcaagctg
     1981 aagcgtcata tccgctcaca cacgggcgag cgtcccttcc agtgcagcca gtgtgcttat
     2041 gccagcaagg acacctacaa actgaaacgc cacatgcgga cacactcagg tgagaagccg
     2101 tacgaatgcc ccacctgcca tgcccggttc acccagagtg ggaccatgaa aatccacata
     2161 gcgcagaagc atggcgagaa tgtgcccaaa cacgagtgtc cccactgtgc caccatcatt
     2221 gcgaggaaga gtgacctgcg tgtccatctg cgcaacctgc acggccacag cccggaggag
     2281 atcaagtgca gatactgccc tgccgccttc cacgaacgct atgccctcct tcagcaccag
     2341 aggacccaca agaatgagaa gaagttcaag tgcaaacagt gcgattacgc gtgcaagcag
     2401 gagcgatgct tgaccgcgca catgcgcacg cacacgggag agaggccttt ctcctgcctg
     2461 acctgcaaca aacatttccg gcagaagcaa ctgctcaccg tgcacctgag gaagtaccat
     2521 gacccgagct tcgtccccag tgtccacctg tgcctcaagt gtggtaaagg tttttcccgc
     2581 tggagcaacc tgcagagaca cagaaagaag tgtgacccag agcatgagaa gtcagccccc
     2641 tccagaaatg gaagaccagt gacaagggct caggcctctg aggaaggagc agaacatgac
     2701 aaagatgttg ccacccagga gagcgccacc tctggagaac ctcggccccc tgaagagcag
     2761 gctctgggcc accaaggaga aagcgcagct gggagcccga gcccagatca aggccttacc
     2821 tgtgagatga tcttcaacat gatggataag tgagcagccg ctgatccgtg ctgcagcctc
     2881 tgggggagaa acaagttaga aagaagttcc cagccgcggc tatcgcgtgt tcccagagtt
     2941 tgaggtagtg tgtagaaatg tttgaagaaa caaaaaagac cctgcaggtt tttcctaaag
     3001 actagagtca gagctcggag tgaaggcaca cttctgcaac gtgggcgtac tctctgggca
     3061 gggcgtattc tctgggcact agcaggtagc ccgacgtgaa ccagtgacag attctaggta
     3121 acacttattt ccacaggagc tcagaccagt taagacctag gtggttagaa cagaaaacct
     3181 ttagttgtat ccacccttga catttcttat atatgtaagt acactgtcgc tgt
//
