LOCUS       XM_001074179             660 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Ctag2 like 1 (Ctag2l1), mRNA.
ACCESSION   XM_001074179
VERSION     XM_001074179.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001074179.6.
            
            On Jan 21, 2021 this sequence version replaced XM_001074179.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..660
                     /gene="Ctag2l1"
                     /note="Ctag2 like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 Proteins, and 72%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:690348"
                     /db_xref="RGD:1597340"
     CDS             1..627
                     /gene="Ctag2l1"
                     /codon_start=1
                     /product="EKC/KEOPS complex subunit LAGE3-like"
                     /protein_id="XP_001074179.2"
                     /db_xref="GeneID:690348"
                     /db_xref="RGD:1597340"
                     /translation="MRDPVEGLGGRAGVEEGEDGQRRPQAPDAQAGSRSSATEGDHGN
                     FPRSCPQDSGRLAAPRTPAASGQAALGGPGPGSAAGSGAAAAEAAVIAHGEQAPLGPG
                     PSGDTASATGSRLLEFSVTVPFRTAVEADMARRSLVANARRQQVMVQQEFTVNDSILA
                     VRWTTEDPVLFRISINSFLDQLSLVMRNIQRLEFVAIVKRGRGRSRES"
ORIGIN      
        1 atgcgggacc ccgttgaggg cttaggtggg agagcggggg tcgaagaagg cgaggatggc
       61 caacggaggc ctcaagctcc ggatgcccag gctggctctc gaagttcagc gactgaaggt
      121 gaccatggca acttccctcg gagttgccca caggactccg ggaggctggc cgctcctagg
      181 accccggccg cgagcggcca ggccgctctg ggtgggccgg gcccggggag tgccgcaggg
      241 tccggagcgg cggctgcaga ggccgccgtc atcgcccacg gcgagcaggc gccgctcggc
      301 ccgggaccca gcggagacac cgcgtcggcg accgggagtc ggctcctgga gttctccgtg
      361 acggtgcctt tccggaccgc ggtggaggcg gacatggccc gcaggtccct ggtcgccaac
      421 gcccgtcgcc agcaagtgat ggttcagcag gagttcacag tgaatgatag tatcctggcc
      481 gttaggtgga ccaccgaaga ccccgtcctc ttccgcatct ccatcaacag tttcctcgac
      541 cagctctccc tggtgatgag aaacattcag cgcctggagt tcgtggccat cgtcaaacgg
      601 ggacgaggaa ggagtcgcga atcctaacgc atcaccggat accggaaaag tcagaagcct
//
