LOCUS       XM_039100440            1394 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cancer/testis antigen family 47,
            member B1 (Ct47b1), transcript variant X1, mRNA.
ACCESSION   XM_039100440
VERSION     XM_039100440.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100440.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1394
                     /gene="Ct47b1"
                     /note="cancer/testis antigen family 47, member B1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102553745"
                     /db_xref="RGD:7519078"
     CDS             263..1129
                     /gene="Ct47b1"
                     /codon_start=1
                     /product="cancer/testis antigen family 47 member C1"
                     /protein_id="XP_038956368.1"
                     /db_xref="GeneID:102553745"
                     /db_xref="RGD:7519078"
                     /translation="MSTRGRRDPTRESRDNPVTLEGEWVLEAAEGGAVGLDGSSATLE
                     AEEVVVDCHREVEDVGPERNPEQEGDRRESVNVEEDSDIEAVEEEEDDQHQESDLANQ
                     NVVDAHHFPMAGFRFMFLDLVHAILNRVYYNDHILVRDPRENQVMGSSNTSESGHPRE
                     LQVPPGPIPSTVRASEYEHQGSDLPEVISTFPELEEPADFEEDYLQEPAFRAAGQAVE
                     EVAEEAAAEEPAKEIIGQAMTSEGENHCARQYKDDNIVDEEEEEEEEEMKNEGFEKMD
                     SDAEDYCTNKFS"
ORIGIN      
        1 tttccatcta gtccccggat gttagcagag gcgcttgggt tggcctccgc ctgggccggt
       61 cgcttctgcc atcacgtccc tgctacttcc atgggactac ctcagggacc aggagcttcc
      121 taatcataat ctttaccaga ggccttgttg tcatctcgca ctccgtagcc atctggtgtc
      181 atcttggccg ttgcagtctg agtagtcatt atcatcatta tcccaggtca gtcaaggcct
      241 tgttgaggta tctactagtg tcatgtcgac cagagggcgt cgagatccaa ccagagagag
      301 ccgagacaac ccagtaactc ttgagggaga gtgggtactg gaagctgcag agggcggcgc
      361 ggtaggccta gatgggtcct ctgccacact tgaagctgaa gaagtagtgg tagattgtca
      421 tagagaggtg gaggatgttg ggcccgaaag aaacccggag caggagggtg acaggagaga
      481 gagtgtgaat gttgaggaag actcggatat tgaagctgtt gaggaagagg aagatgacca
      541 gcaccaggaa agtgatttag caaatcaaaa cgtggtggat gcccatcatt tcccaatggc
      601 tggcttccgg tttatgtttc tggatctggt ccatgccatt ctcaatcgtg tctattacaa
      661 cgaccacatc ctggttagag acccccgaga aaaccaagtg atgggctcat ctaacacttc
      721 tgaatctggc cacccacgtg agctccaagt accacccggg cccatcccat caacagtgag
      781 ggcctcagag tatgagcatc agggctccga ccttccggag gttatctcca catttccaga
      841 gctggaagag cctgctgact tcgaggaaga ttacctgcag gagccagcat ttagggcagc
      901 cggacaagca gtggaagagg tggcagaaga ggcagcagca gaagagccag caaaggaaat
      961 catagggcaa gccatgactt ctgaaggtga aaaccattgt gctagacagt ataaagatga
     1021 caacatagtt gatgaggaag aagaggaaga ggaagaagaa atgaaaaatg aaggctttga
     1081 gaaaatggat tcagatgcag aagactactg caccaacaaa ttcagctgag tgatccataa
     1141 aatatgtgga ggtaaaggtc tgggaggtta agaagaatag gaagaaaagg atgaagaaag
     1201 aaggtttaat gaagttcacc aaatgtagac tttccacttc ttagaagccc aacaaagttt
     1261 caacaatgac ttcatcctaa agttcattat ccaatagcaa aaatccctcc ttctacattt
     1321 aacatggttc gttcaagttc taaatgaaac aatgtcatgt aataaaataa aacacaggca
     1381 tgatttggaa acaa
//
