LOCUS       NM_001077672            2028 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus cleavage stimulation factor subunit 3 (Cstf3),
            mRNA.
ACCESSION   NM_001077672 XM_001072972 XM_342477
VERSION     NM_001077672.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Gruber AR, Martin G, Keller W and Zavolan M.
  TITLE     Means to an end: mechanisms of alternative polyadenylation of
            messenger RNA precursors
  JOURNAL   Wiley Interdiscip Rev RNA 5 (2), 183-196 (2014)
   PUBMED   24243805
  REMARK    Review article
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Shankarling GS and MacDonald CC.
  TITLE     Polyadenylation site-specific differences in the activity of the
            neuronal betaCstF-64 protein in PC-12 cells
  JOURNAL   Gene 529 (2), 220-227 (2013)
   PUBMED   23948079
REFERENCE   3  (bases 1 to 2028)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 2028)
  AUTHORS   Chan S, Choi EA and Shi Y.
  TITLE     Pre-mRNA 3'-end processing complex assembly and function
  JOURNAL   Wiley Interdiscip Rev RNA 2 (3), 321-335 (2011)
   PUBMED   21957020
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC127520.1.
            
            On or before Nov 15, 2006 this sequence version replaced
            XM_342477.3, XM_001072972.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC127520.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132266
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..2028
                     /gene="Cstf3"
                     /note="cleavage stimulation factor subunit 3"
                     /db_xref="GeneID:362178"
                     /db_xref="RGD:1305901"
     exon            1..164
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     CDS             138..1910
                     /gene="Cstf3"
                     /note="cleavage stimulation factor, 3' pre-RNA, subunit 3,
                     77kDa"
                     /codon_start=1
                     /product="cleavage stimulation factor subunit 3"
                     /protein_id="NP_001071140.1"
                     /db_xref="GeneID:362178"
                     /db_xref="RGD:1305901"
                     /translation="MSGDAAAEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQN
                     QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWK
                     CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYA
                     ENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR
                     VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV
                     MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST
                     LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK
                     SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY
                     IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR
                     FTAFREEYEGKETALLVDRYKFMDLYPCSASELKALGYKVCTQQQDGRSVPLPLRFQE
                     SMHCTVFILRSILYSVATKTKIFH"
     exon            165..266
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            267..362
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            363..395
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            396..493
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            494..560
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            561..595
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            596..722
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            723..800
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            801..963
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1073
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1190
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1265
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1409
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1512
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1582
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..2002
                     /gene="Cstf3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgattttt gcggcggctc tggctccgag ggacaagggg tagcgttact ggttttggtg
       61 gggttgtttt tagtttaaaa ttttcctttc tagcttccca ttgccggccc gtgtgtacgt
      121 tgtaatcctc tgaggccatg tcaggagacg cagccgcgga gcaggcagct gaatatgtcc
      181 cagagaaggt gaagaaagcg gaaaagaaat tagaagaaaa tccatatgac cttgatgctt
      241 ggagcattct cattcgagag gcacagaatc aacctataga caaagcacgg aagacttacg
      301 aacgccttgt tgcccagttc cccagttctg gcagattctg gaaactgtac attgaagcag
      361 agattaaagc taaaaattat gacaaggttg aaaagctatt tcaaagatgc cttatgaagg
      421 ttttgcacat tgatttatgg aagtgttatc tttcatacgt cagagaaacc aagggtaaac
      481 tgccaagtta caaagaaaaa atggctcaag cttatgactt tgcactggat aaaattggaa
      541 tggaaattat gtcctatcag atttgggtgg attacatcaa tttcttaaaa ggcgtggaag
      601 ctgtaggatc ttatgcagaa aatcagagaa taactgctgt ccgaagagtt tatcaacgag
      661 gttgtgttaa tccaatgatc aacattgaac aactctggag agactacaac aagtatgaag
      721 agggtatcaa tattcattta gctaaaaaga tgattgaaga tcgaagtaga gactacatga
      781 atgctagacg tgtagcaaag gaatacgaga cagtgatgaa aggtttggac cgcaatgccc
      841 cttcagtgcc ccctcagaat acccctcaag aagctcagca agtagacatg tggaagaagt
      901 acatccagtg ggagaagagc aaccccctgc gtaccgagga ccagaccctc ataacaaagc
      961 gagttatgtt tgcctatgaa cagtgcctac ttgtgctggg ccatcaccct gatatctggt
     1021 atgaagctgc ccagtatctg gaacagtcga gtaagctgct cgcagaaaag ggggatatga
     1081 acaatgccaa attatttagt gatgaagctg ctaatatata tgaacgagcc atcagcactt
     1141 tattaaagaa gaacatgctc ctttactttg catatgcaga ttatgaagag agtcgcatga
     1201 agtacgagaa agttcacagt atatataaca gactgctggc aattgaggac attgacccca
     1261 ccttggtata tatccaatat atgaaatttg caaggagagc agaaggtatc aaatctggaa
     1321 gaatgatatt taaaaaggca agagaggatg cgagaacccg tcatcacgtc tatgtgaccg
     1381 cagcgctcat ggagtattac tgcagtaagg acaaatctgt tgcctttaag atttttgaat
     1441 tgggactaaa gaaatatgga gatattccag agtatgtttt ggcttatatt gactatctct
     1501 ctcacctcaa tgaggacaat aacacccgag ttctgtttga aagagtcttg acgtctggaa
     1561 gccttcctcc cgagaagtcc ggagaaatct gggctcggtt tctagctttt gaaagcaaca
     1621 ttggtgattt agctagtatt ctcaaagtgg agaaaagacg ctttacagcg ttcagagaag
     1681 agtatgaagg caaagaaaca gctttattgg tagacagata caagtttatg gatttatacc
     1741 cttgttctgc aagtgaactc aaagcactgg gctacaaggt atgtactcag cagcaagatg
     1801 gccgcagtgt tccccttccc ctacggtttc aggagtccat gcactgcaca gttttcattc
     1861 tacggtcaat tctttactct gttgctacta agacaaaaat atttcattga ctttatttat
     1921 tttgttgttg tttatggaaa tcacaagtaa caaaaaaatg gaaattaaac atttgagagc
     1981 aaataaatgc ttccattgtg tgaaaaaaaa aaaaaaaaaa aaaaaaaa
//
