LOCUS       NM_001107586            3567 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus cleavage stimulation factor subunit 2, tau
            variant (Cstf2t), mRNA.
ACCESSION   NM_001107586 XM_001080434 XM_219809
VERSION     NM_001107586.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3567)
  AUTHORS   Gruber AR, Martin G, Keller W and Zavolan M.
  TITLE     Means to an end: mechanisms of alternative polyadenylation of
            messenger RNA precursors
  JOURNAL   Wiley Interdiscip Rev RNA 5 (2), 183-196 (2014)
   PUBMED   24243805
  REMARK    Review article
REFERENCE   2  (bases 1 to 3567)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3567)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3567)
  AUTHORS   Chan S, Choi EA and Shi Y.
  TITLE     Pre-mRNA 3'-end processing complex assembly and function
  JOURNAL   Wiley Interdiscip Rev RNA 2 (3), 321-335 (2011)
   PUBMED   21957020
  REMARK    Review article
REFERENCE   5  (bases 1 to 3567)
  AUTHORS   Dass B, McMahon KW, Jenkins NA, Gilbert DJ, Copeland NG and
            MacDonald CC.
  TITLE     The gene for a variant form of the polyadenylation protein CstF-64
            is on chromosome 19 and is expressed in pachytene spermatocytes in
            mice
  JOURNAL   J Biol Chem 276 (11), 8044-8050 (2001)
   PUBMED   11113135
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473953.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_219809.4, XM_001080434.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC169065.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3567
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q52"
     gene            1..3567
                     /gene="Cstf2t"
                     /note="cleavage stimulation factor subunit 2, tau variant"
                     /db_xref="GeneID:309338"
                     /db_xref="RGD:1310026"
     exon            1..3567
                     /gene="Cstf2t"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1959
                     /gene="Cstf2t"
                     /note="cleavage stimulation factor subunit 2 tau; cleavage
                     stimulation factor, 3' pre-RNA, subunit 2, tau; cleavage
                     stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau"
                     /codon_start=1
                     /product="cleavage stimulation factor subunit 2 tau
                     variant"
                     /protein_id="NP_001101056.1"
                     /db_xref="GeneID:309338"
                     /db_xref="RGD:1310026"
                     /translation="MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVS
                     FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELK
                     SLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARN
                     MLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQPVSGPGPGGPGG
                     PGGPGGPGPGPAPGLCPGPNVMLNQQNPAPQPQHLPRRPVKDIPPLMQTSIQGGIPAP
                     GPIPAAVPGPGPGSLTPGGTMQPQVGMPVVGPVPLERGQMQISDPRPPMPRGPMPSGG
                     IPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYMGPPHQGPPMHHGHDNRGPASHDMRGG
                     PLAADPRMLIGEPRGPMMDQRGLPMDGRGGRDSRGMEARPMETEVLEPRGMERRMETC
                     AMETRGMEARGIDARGLEMRGPGPSSRGPMTGGIQGPGPINMGAGGPQGPRQVPNIAG
                     VGNPGGAMQGAGIQGAGMQGAGMQGGGMQGAGMQGGGMQGAGMQGGGMQGAGMQGASK
                     QGAGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK
                     STGAS"
ORIGIN      
        1 cggaagtgtg gttcaccaga ggacgaccct tggacgaatt tactctccgc taaacgctcg
       61 gcaggaatca tgtcgagttt ggcggtcaga gacccagcca tggatcgatc actgcgttcg
      121 gtgttcgtgg ggaacattcc gtatgaggcg acggaggagc agttaaagga cattttctcg
      181 gaggttggtt cagttgtcag tttccgtctc gtctacgata gagagacagg aaagcccaag
      241 ggttatggct tctgcgagta ccaagaccag gagactgcgc ttagtgccat gcggaacctc
      301 aatgggcgag aatttagtgg gagagcgctt cgggtggaca atgctgccag tgaaaagaac
      361 aaggaggagt taaaaagctt aggcccggca gcccccatca ttgactcacc ctatggggac
      421 cctattgatc cagaagatgc tccagaatcg attactaggg cagtcgccag cctgccccca
      481 gagcaaatgt ttgagctgat gaagcaaatg aagttgtgtg tccaaaacag tcaccaggaa
      541 gctcgaaaca tgctacttca gaacccacaa ttggcgtacg ctctgctgca ggcacaagtg
      601 gtgatgagaa tcatggatcc agagattgca ctgaaaattt tgcatcgtaa gatccatgtc
      661 acaccactga tcccaggcaa atcacagcct gtctctgggc ctggccctgg tgggcctggt
      721 ggccctggtg gccctggcgg ccctggcccc ggccctgccc ctggcctctg cccaggacct
      781 aacgtcatgt tgaaccaaca gaatcctgcc cctcagcctc agcatttacc aagaagacct
      841 gtgaaggaca ttcctcctct gatgcagacc tcgatccagg gcggaattcc agctccgggg
      901 ccaataccag ctgcagttcc tggacctgga cctggttcct taaccccggg aggaaccatg
      961 cagccacagg ttggcatgcc agtggttggt ccagtgccct tagagcgagg acagatgcag
     1021 atatcagatc ctagacctcc aatgcctcgt ggacccatgc cttctggtgg catccctcct
     1081 cgaggactac tgggagatgc tccaaatgac ccgcgtggag gaactttgct ctcagtgact
     1141 ggagaagtag agcccagagg ctatatggga ccaccccatc agggtcctcc aatgcatcat
     1201 ggtcatgaca accgtggccc tgcctcacat gatatgagag gaggaccgtt ggcagcagat
     1261 cccagaatgc tgattggaga acccagaggt cccatgatgg atcaaagagg tctacctatg
     1321 gatggtagag gaggaagaga ctctcgaggg atggaggccc ggcccatgga aacggaggtc
     1381 ttggagccac gaggaatgga gagaagaatg gagacctgtg caatggaaac cagagggatg
     1441 gaagcaagag gcatagacgc aagaggactg gagatgaggg gccctggccc tagttcccga
     1501 ggtccgatga ctggtgggat ccagggtcct ggccccatta atatgggggc aggtggccct
     1561 cagggacctc gacaggttcc aaacattgca ggagtgggaa atcctggagg tgccatgcag
     1621 ggggcaggta tacaaggagc aggaatgcag ggggcaggta tgcagggagg agggatgcag
     1681 ggggcaggca tgcagggagg agggatgcag ggggcaggca tgcagggagg agggatgcag
     1741 ggggctggca tgcaaggagc cagtaagcaa ggtgcgggcc agcctagtag ttttagcccg
     1801 gggcaaagcc aggtaactcc tcaagatcaa gaaaaagcag ctttgatcat gcaggttctt
     1861 cagctgactg cagatcagat tgccatgctg cctcctgagc aaaggcagag cattttgatt
     1921 ttaaaggaac aaatccagaa atctacgggt gcttcttgaa aggttttcag ctaagaagta
     1981 cttagttatt ccttcagggt ttactctgtg gcatgaagtg ggtgcaaaaa gctgtcttct
     2041 gtgttcgcac actttaacca tttaaggttt ccttctcccc agaccttaaa tcttatttct
     2101 agttttgtta ctttctgttt tcctttttat tttttgattg aggggagggg gtggaggggg
     2161 ggggcctgtt tactttgtca ctgttgactc tactgggtac cctaaaaatg actacatcat
     2221 acaaaataag gttatgagga aaatgcggca ataatttgca cttttgttaa ctgtgtttta
     2281 aaaatactga gtaaactggg aactacataa aaattgaaag tggcttgtta cagtattgat
     2341 atactaagat agtttaaagt tctttggttg tatattgaac tgaatgtcag aatgttaagg
     2401 tacacttttt ggtaaaagaa attactatat tttggaggca gcagagtact gtagtaaggt
     2461 taatgtttag ttattttgga attattttga aatattggag ctaacagttt gtggtgtaga
     2521 tgtgtgtttt tttaaagcat tgttatctgt aaaaagataa ttttcattta tctgactttt
     2581 ttttttttga gaccattaat attcttgcct gatcccaact ggtaattttg caggatagtt
     2641 gtagtgtcag ctgaattaca taaaacctcc ttcttataca tttctctaaa aaattcttaa
     2701 ggcccaagtc tggttgtaag tagttttttc acatcctttt aaagaatcag acatgaggtt
     2761 tgactttctt gagtaatgga ggtttttggg gtttttttgt ttttgttttt cagtaaagct
     2821 cccaagttct tgataaccta ctatccattc acagatggaa tccattaggt cagcaagaac
     2881 cagaagttaa aatcttactc tatgcctttt gatatgtctt acagtttgat aactttcaca
     2941 aactactttt ctatcatcac cttgctagaa ctggggccca agtgaactga caactctgct
     3001 cagttaactt aatatgttat ttctcacaac tcacaaaagc tctttggtca taacgtagtt
     3061 cccatgaagt gtgtttgaga ataaggaatg tggaacttaa tccatttctt ttagagctac
     3121 tgtatcattt tcaatcaatg tggcacctgg acacggtgtc atatttagat aatgagcaga
     3181 aacaagcaca agctcccact tgaccaagtg gcattcctct gtggaaaaat aaatacccac
     3241 ctacagaggg atgagcagcc ttagggaggg agctgaccca aggttgtttt cccttgcaaa
     3301 gtttgagcat ttttgagtgt acagagtttt cattcctagg ctattttcca gccatttagt
     3361 ttttgtgcta gtgttagact cctgtggttt cctctgcctc ctatgctgag gtgggtttgt
     3421 ggtctgtacc tttgtgctag ttctgactaa ttccaattgc ttgcttcttt cgagactgca
     3481 gttgctagcc caaaacttct tacagtcttt gttataagaa aatctctgca ttgtttcatg
     3541 aaaattaaat aaaaaggtta tataatt
//
