LOCUS       XM_039100070            1886 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cleavage stimulation factor subunit 2
            (Cstf2), transcript variant X11, mRNA.
ACCESSION   XM_039100070
VERSION     XM_039100070.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100070.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1886
                     /gene="Cstf2"
                     /note="cleavage stimulation factor subunit 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 3 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     37 samples with support for all annotated introns"
                     /db_xref="GeneID:683927"
                     /db_xref="RGD:1596566"
     CDS             230..1405
                     /gene="Cstf2"
                     /codon_start=1
                     /product="cleavage stimulation factor subunit 2 isoform
                     X8"
                     /protein_id="XP_038955998.1"
                     /db_xref="GeneID:683927"
                     /db_xref="RGD:1596566"
                     /translation="MSGMHVNGAPPMMQASMPGGVPAPVQMAAAVAGPGPGSLAPAGV
                     MQAQVGMQGAGPVPMERGQGTLQHSPVGPAGPASIERVQGQRTWMIWASVRGSTPSLL
                     VSGGLDGIAVLPMQDPRAAMQRGALPANVPTPRGLLGDAPNDPRGGTLMTVTGEVEPR
                     AYLGPPPPPHQGPPMHHVPGHEGRGPPPHDMRGGPLAEPRPLMAEPRGPMLDQRGPPL
                     DARGGRDPRGLDARGMEARAMEARGLEARAMEARAMEARAMEARAMEARAMEARAMEA
                     RGMDTRGPVPGPRGPIPSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQP
                     GGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP"
ORIGIN      
        1 aaaattctgc accgccagac aaatatccca acgctgattt caggcaaccc tcagccagtc
       61 catgttgccg gacctggctc aggacccaat gtttcaatga accagcagaa tcctcaggcc
      121 cctcaggctc aatctttggt agggctttat tccacaacat ttttatctgt cttaaaatgt
      181 tattttcttt ccaggaaact attgagagaa gaaacagcag gaatcggaga tgagtggaat
      241 gcatgtcaat ggcgcacctc ctatgatgca agcttctatg ccaggtggag ttccagcacc
      301 agtgcagatg gcagctgctg tagcaggacc tggccctggt tccttagccc ctgcaggagt
      361 catgcaagcc caagttggaa tgcaaggagc tggaccagtg cccatggaac gaggacaagg
      421 aaccttacag cactcgcccg tgggacccgc cgggcctgca tcaattgagc gagttcaagg
      481 gcagagaaca tggatgatat gggcatctgt ccgaggctct actccctccc tactggtgtc
      541 aggaggcttg gatggaattg cagtcttgcc aatgcaagac cccagagcag ctatgcagcg
      601 gggagccttg cctgccaacg tcccaactcc tcgtggtctt ttaggtgatg ctcccaatga
      661 tccacgggga ggcactttaa tgaccgtaac tggagaagta gaacctagag cttacctggg
      721 accaccacca ccacctcatc agggcccacc gatgcaccac gttcctggcc atgaaggtcg
      781 tggaccacca ccgcatgaca tgagaggagg accgttagct gagcccagac cgttaatggc
      841 agagccaaga ggacctatgc tagatcagag gggtccaccg ttggatgcca gaggtggaag
      901 agatccccga ggattagatg cacgagggat ggaggccaga gccatggaag ccagaggact
      961 ggaagcccgt gccatggaag cccgtgccat ggaagcccgt gccatggaag ctcgtgccat
     1021 ggaggcccga gccatggagg ctcgtgccat ggaggccaga ggcatggata ccagaggccc
     1081 agtacctgga cctagaggac ctatacctag tggaatccaa ggccccaatc caatgaacat
     1141 gggggcagtt gttccccagg gatccagaca ggtcccagtc atgcagggag caggcatgca
     1201 aggagcaagc atgcaaggtg gaagccagcc tggtggcttt agtcctggac agagccaagt
     1261 cacaccccag gatcatgaga aggctgcttt gattatgcag gtccttcaac tcactgcaga
     1321 ccagattgcc atgctgcctc ctgagcaaag acagagcatc ctaatcttaa aggaacagat
     1381 acagaaatcc accggggcac cttgaaaggt tctcaaaaat acctggcaac aaatctggaa
     1441 atgtaattcc ataacattgt tgaaatgttg aaaacatagt gacttctgca tctaaccccc
     1501 ctggatgact cagattggta ccaggtggag gacctgcatc accatttctc caaaggaaaa
     1561 cagttcattc tgatgtcgta gtttgtatat tttctgtgat gttaaataaa cattgaacat
     1621 aagtttaaca tattacaaat tgaaatacat aatccttttg ctgttaagaa gctaacacca
     1681 aggataaaag cttagctgtg atttctgacc ttactgcagt gtcattcttt aatcttacat
     1741 tgccgtagct ctattcttac tttagcataa acatttattc ttcttaatga tacttgagaa
     1801 tttctcagaa acaatgtttt taggaacttt gttttttgtt gaatttgctt tcagcaaggt
     1861 aataagactt tggcccttga aaactt
//
