LOCUS       XM_039100067            2384 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cleavage stimulation factor subunit 2
            (Cstf2), transcript variant X8, mRNA.
ACCESSION   XM_039100067
VERSION     XM_039100067.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100067.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2384
                     /gene="Cstf2"
                     /note="cleavage stimulation factor subunit 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 6 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 215 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:683927"
                     /db_xref="RGD:1596566"
     CDS             194..1903
                     /gene="Cstf2"
                     /codon_start=1
                     /product="cleavage stimulation factor subunit 2 isoform
                     X5"
                     /protein_id="XP_038955995.1"
                     /db_xref="GeneID:683927"
                     /db_xref="RGD:1596566"
                     /translation="MAGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVS
                     FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELK
                     SLGTGAPVIESPYGESISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARN
                     MLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQPVHVAGPGSGPN
                     VSMNQQNPQAPQAQSLSGMHVNGAPPMMQASMPGGVPAPVQMAAAVAGPGPGSLAPAG
                     VMQAQVGMQGAGPVPMERGQGTLQHSPVGPAGPASIERVQGDAPNDPRGGTLMTVTGE
                     VEPRAYLGPPPPPHQGPPMHHVPGHEGRGPPPHDMRGGPLAEPRPLMAEPRGPMLDQR
                     GPPLDARGGRDPRGLDARGMEARAMEARGLEARAMEARAMEARAMEARAMEARAMEAR
                     AMEARGMDTRGPVPGPRGPIPSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQG
                     GSQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST
                     GAP"
ORIGIN      
        1 cccgcagact gttgcccctc ccccgggcca aacgctaggc gggaaccaac acggtcaggc
       61 gcgcagcagg atctgtggcg cttttggtcc aggtgcttcc ggctcccacc ggacggaggc
      121 cggctcggtc gtggactcgc tctcccacgg aagtgtgctt tagcgcaccg gaagccacct
      181 cagggggtga gccatggcgg gtttgcctgt tagagaccct gcggtggatc gttctctgcg
      241 ttctgtattc gtggggaaca ttccttatga agctactgaa gaacaactga aggacatctt
      301 ctctgaggtt gggcctgttg ttagtttcag attggtatac gatagggaga caggaaaacc
      361 aaagggttat ggcttctgcg aataccaaga ccaagagaca gcacttagtg ccatgcggaa
      421 cttgaatggg cgtgaattca gtgggagagc acttcgagtg gacaatgctg ccagtgaaaa
      481 gaacaaagag gaactgaaga gccttggcac tggtgcacct gtcatagagt caccttatgg
      541 agaaagcatc agccctgagg atgcccctga atccattagc aaagctgttg ccagtcttcc
      601 gccagaacag atgtttgaac tgatgaaaca aatgaagctc tgtgtccaga atagtcccca
      661 ggaagcacga aacatgttgc ttcagaaccc acagctggct tatgctttgc tgcaagcaca
      721 ggtagtgatg agaattgtgg atcctgagat tgccctgaaa attctgcacc gccagacaaa
      781 tatcccaacg ctgatttcag gcaaccctca gccagtccat gttgccggac ctggctcagg
      841 acccaatgtt tcaatgaacc agcagaatcc tcaggcccct caggctcaat ctttgagtgg
      901 aatgcatgtc aatggcgcac ctcctatgat gcaagcttct atgccaggtg gagttccagc
      961 accagtgcag atggcagctg ctgtagcagg acctggccct ggttccttag cccctgcagg
     1021 agtcatgcaa gcccaagttg gaatgcaagg agctggacca gtgcccatgg aacgaggaca
     1081 aggaacctta cagcactcgc ccgtgggacc cgccgggcct gcatcaattg agcgagttca
     1141 aggtgatgct cccaatgatc cacggggagg cactttaatg accgtaactg gagaagtaga
     1201 acctagagct tacctgggac caccaccacc acctcatcag ggcccaccga tgcaccacgt
     1261 tcctggccat gaaggtcgtg gaccaccacc gcatgacatg agaggaggac cgttagctga
     1321 gcccagaccg ttaatggcag agccaagagg acctatgcta gatcagaggg gtccaccgtt
     1381 ggatgccaga ggtggaagag atccccgagg attagatgca cgagggatgg aggccagagc
     1441 catggaagcc agaggactgg aagcccgtgc catggaagcc cgtgccatgg aagcccgtgc
     1501 catggaagct cgtgccatgg aggcccgagc catggaggct cgtgccatgg aggccagagg
     1561 catggatacc agaggcccag tacctggacc tagaggacct atacctagtg gaatccaagg
     1621 ccccaatcca atgaacatgg gggcagttgt tccccaggga tccagacagg tcccagtcat
     1681 gcagggagca ggcatgcaag gagcaagcat gcaaggtgga agccagcctg gtggctttag
     1741 tcctggacag agccaagtca caccccagga tcatgagaag gctgctttga ttatgcaggt
     1801 ccttcaactc actgcagacc agattgccat gctgcctcct gagcaaagac agagcatcct
     1861 aatcttaaag gaacagatac agaaatccac cggggcacct tgaaaggttc tcaaaaatac
     1921 ctggcaacaa atctggaaat gtaattccat aacattgttg aaatgttgaa aacatagtga
     1981 cttctgcatc taacccccct ggatgactca gattggtacc aggtggagga cctgcatcac
     2041 catttctcca aaggaaaaca gttcattctg atgtcgtagt ttgtatattt tctgtgatgt
     2101 taaataaaca ttgaacataa gtttaacata ttacaaattg aaatacataa tccttttgct
     2161 gttaagaagc taacaccaag gataaaagct tagctgtgat ttctgacctt actgcagtgt
     2221 cattctttaa tcttacattg ccgtagctct attcttactt tagcataaac atttattctt
     2281 cttaatgata cttgagaatt tctcagaaac aatgttttta ggaactttgt tttttgttga
     2341 atttgctttc agcaaggtaa taagactttg gcccttgaaa actt
//
