LOCUS       XM_039100063            4657 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cleavage stimulation factor subunit 2
            (Cstf2), transcript variant X1, mRNA.
ACCESSION   XM_039100063
VERSION     XM_039100063.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100063.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4657
                     /gene="Cstf2"
                     /note="cleavage stimulation factor subunit 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 26 ESTs, 7 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     49 samples with support for all annotated introns"
                     /db_xref="GeneID:683927"
                     /db_xref="RGD:1596566"
     CDS             196..2070
                     /gene="Cstf2"
                     /codon_start=1
                     /product="cleavage stimulation factor subunit 2 isoform
                     X1"
                     /protein_id="XP_038955991.1"
                     /db_xref="GeneID:683927"
                     /db_xref="RGD:1596566"
                     /translation="MAGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVS
                     FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELK
                     SLGTGAPVIESPYGESISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARN
                     MLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQPVHVAGPGSGPN
                     VSMNQQNPQAPQAQSLSGMHVNGAPPMMQASMPGGVPAPVQMAAAVAGPGPGSLAPAG
                     VMQAQVGMQGAGPVPMERGQGTLQHSPVGPAGPASIERVQGQRTWMIWASVRGSTPSL
                     LVSGGLDGIAVLPMQDPRAAMQRGALPANVPTPRGLLGDAPNDPRGGTLMTVTGEVEP
                     RAYLGPPPPPHQGPPMHHVPGHEGRGPPPHDMRGGPLAEPRPLMAEPRGPMLDQRGPP
                     LDARGGRDPRGLDARGMEARAMEARGLEARAMEARAMEARAMEARAMEARAMEARAME
                     ARGMDTRGPVPGPRGPIPSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQ
                     PGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
                     "
ORIGIN      
        1 ctcccgcaga ctgttgcccc tcccccgggc caaacgctag gcgggaacca acacggtcag
       61 gcgcgcagca ggatctgtgg cgcttttggt ccaggtgctt ccggctccca ccggacggag
      121 gccggctcgg tcgtggactc gctctcccac ggaagtgtgc tttagcgcac cggaagccac
      181 ctcagggggt gagccatggc gggtttgcct gttagagacc ctgcggtgga tcgttctctg
      241 cgttctgtat tcgtggggaa cattccttat gaagctactg aagaacaact gaaggacatc
      301 ttctctgagg ttgggcctgt tgttagtttc agattggtat acgataggga gacaggaaaa
      361 ccaaagggtt atggcttctg cgaataccaa gaccaagaga cagcacttag tgccatgcgg
      421 aacttgaatg ggcgtgaatt cagtgggaga gcacttcgag tggacaatgc tgccagtgaa
      481 aagaacaaag aggaactgaa gagccttggc actggtgcac ctgtcataga gtcaccttat
      541 ggagaaagca tcagccctga ggatgcccct gaatccatta gcaaagctgt tgccagtctt
      601 ccgccagaac agatgtttga actgatgaaa caaatgaagc tctgtgtcca gaatagtccc
      661 caggaagcac gaaacatgtt gcttcagaac ccacagctgg cttatgcttt gctgcaagca
      721 caggtagtga tgagaattgt ggatcctgag attgccctga aaattctgca ccgccagaca
      781 aatatcccaa cgctgatttc aggcaaccct cagccagtcc atgttgccgg acctggctca
      841 ggacccaatg tttcaatgaa ccagcagaat cctcaggccc ctcaggctca atctttgagt
      901 ggaatgcatg tcaatggcgc acctcctatg atgcaagctt ctatgccagg tggagttcca
      961 gcaccagtgc agatggcagc tgctgtagca ggacctggcc ctggttcctt agcccctgca
     1021 ggagtcatgc aagcccaagt tggaatgcaa ggagctggac cagtgcccat ggaacgagga
     1081 caaggaacct tacagcactc gcccgtggga cccgccgggc ctgcatcaat tgagcgagtt
     1141 caagggcaga gaacatggat gatatgggca tctgtccgag gctctactcc ctccctactg
     1201 gtgtcaggag gcttggatgg aattgcagtc ttgccaatgc aagaccccag agcagctatg
     1261 cagcggggag ccttgcctgc caacgtccca actcctcgtg gtcttttagg tgatgctccc
     1321 aatgatccac ggggaggcac tttaatgacc gtaactggag aagtagaacc tagagcttac
     1381 ctgggaccac caccaccacc tcatcagggc ccaccgatgc accacgttcc tggccatgaa
     1441 ggtcgtggac caccaccgca tgacatgaga ggaggaccgt tagctgagcc cagaccgtta
     1501 atggcagagc caagaggacc tatgctagat cagaggggtc caccgttgga tgccagaggt
     1561 ggaagagatc cccgaggatt agatgcacga gggatggagg ccagagccat ggaagccaga
     1621 ggactggaag cccgtgccat ggaagcccgt gccatggaag cccgtgccat ggaagctcgt
     1681 gccatggagg cccgagccat ggaggctcgt gccatggagg ccagaggcat ggataccaga
     1741 ggcccagtac ctggacctag aggacctata cctagtggaa tccaaggccc caatccaatg
     1801 aacatggggg cagttgttcc ccagggatcc agacaggtcc cagtcatgca gggagcaggc
     1861 atgcaaggag caagcatgca aggtggaagc cagcctggtg gctttagtcc tggacagagc
     1921 caagtcacac cccaggatca tgagaaggct gctttgatta tgcaggtcct tcaactcact
     1981 gcagaccaga ttgccatgct gcctcctgag caaagacaga gcatcctaat cttaaaggaa
     2041 cagatacaga aatccaccgg ggcaccttga aaggttctca aaaatacctg gcaacaaatc
     2101 tggaaatgta attccataac attgttgaaa tgttgaaaac atagtgactt ctgcatctaa
     2161 cccccctgga tgactcagat tggtaccagg tggaggacct gcatcaccat ttctccaaag
     2221 gaaaacagtt cattctgatg tcgtagtttg tatattttct gtgatgttaa ataaacattg
     2281 aacataagtt taacatatta caaattgaaa tacataatcc ttttgctgtt aagaagctaa
     2341 caccaaggat aaaagcttag ctgtgatttc tgaccttact gcagtgtcat tctttaatct
     2401 tacattgccg tagctctatt cttactttag cataaacatt tattcttctt aatgatactt
     2461 gagaatttct cagaaacaat gtttttagga actttgtttt ttgttgaatt tgctttcagc
     2521 aaggtaataa gactttggcc cttgaaaact ttccagtctt agagttttct gggagaaaaa
     2581 aagcatgtgg ttagaactac aaacaattag aagaccaaca agcgaagagc ataccacagg
     2641 ggtgtgtttg gtttaaggaa tgccaattct caaactgtgg ttttagtcag ttgcaggtct
     2701 ggacatacat aagacaaaga ttgttttggc actggtttga atgtgaatca acaacctaag
     2761 actgttgtaa agctcttctg tctatgtatc aactttacaa ggttttctac atgttcaaat
     2821 ttaataaaga aaaccaagtg aacaaactat attccattct ttcagaaaat tgcaaagctt
     2881 tcagccctat catcttctct aaatccattc caaaaactcc caacagaaaa ccctaaaact
     2941 tttacatttt caagtctttt aagaggacca agtacaggat ggcaaattgc ccattatggt
     3001 tgcctgctac tttcaaagta ctacctactt gaaaggtaat tagtgccatt agcctgtgct
     3061 aacttgcagg ttgtcttgcc ttttgttctc ccgtagtggc attaaggagg aacatggttt
     3121 ctctctacca ggtccacctc aagacatttg aagagttgcc gtaataatta gtgaagctca
     3181 ctagcactaa ttgtgagctc gtttgtattc ccagagccct actctgcatt aggattatgg
     3241 gcacgtgaac taaaatcact acttacggca taaaaagcat aatcatgcca aggaaaagaa
     3301 agcaaagcta ttaaaatgga gggattcttc tccagacatt gataatgaaa atttgctgga
     3361 tatgtcatac tataagctat gaagaaaagc gcagaacaac aagcactcct acctgttcca
     3421 ctcatcccca gttcaatcgg gtgttaatta tgcatgcagt tcattgtttt cattaccttc
     3481 tgtgcctcct gcataagcag tccttgatgt gttggttttg acagctgtta gacttaaaag
     3541 caccaatgta tttagatgca gagacaaaga ggaaaatatt tctagttggg agcttgggtt
     3601 ttacacaacc aattccaaat caagataagt aatgctgaag ttatttggaa aacagttgtc
     3661 taacagaaac tatatcctga gaatccagca gtttcccaaa gccttcttaa acttaatttg
     3721 gttagtagac ctcaggtgaa taagttgaca agagcggtgg catcccagtt catcattatg
     3781 gaaacactca tcagtggttt gtttgtttgt ttgtttgttt gtttgctgtt atttttactg
     3841 ttgtaataat tcaattagct actccacgtt tatgatctgc ctttatatgt tcagactaat
     3901 gactgacaag tgatcccact gatccttcaa gctataggta cttagataaa ttacgaaaac
     3961 aaagttgttc actcttgatc tatggtacaa attagatggt ccagtgctat ctatagattc
     4021 attctgttaa atgtatgagg tccattgcct gagtacaatg aagtgtgggg gtttttttct
     4081 tcctcaagga gcctgcacct tttcttgaaa tccatcataa ctaacatccc agagccagtg
     4141 tggttattgt cctggtggat aggaaaaatg aacatgtttg taggaaaaag aatgacatct
     4201 tagtggatga ttcctcattg agtaagacct ggaaaacagt caaaattata actttttatt
     4261 ttctttttat aacacattca taaacaaaac tctttaacaa caacaacaaa aaatggaaag
     4321 agcttctgtt aaattacccc acgatgtagg tcaggccttt ccagttattt caaacaatac
     4381 aaactggcaa tatagttggc ttctaactat aatacaaatt tgattccagt taatatactt
     4441 aagatattac tagggaaagt cagcaaaatt gttcaataag caaagatgaa gattattttg
     4501 gcacagtaaa gtataaattg ttggtcacac tggatgataa gctcatgtat aacgatgtac
     4561 ttagtgggta tgatatggga gtgggaatct tggtaatttt atgtttatta tttatgatta
     4621 ttgttttgtc gtggattcaa taaatatttt aaaatca
//
