LOCUS       XM_039088909            1587 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cystatin domain containing 4 (Cstdc4),
            transcript variant X1, mRNA.
ACCESSION   XM_039088909
VERSION     XM_039088909.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088909.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1587
                     /gene="Cstdc4"
                     /note="cystatin domain containing 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100362978"
                     /db_xref="RGD:2323715"
     CDS             1174..1464
                     /gene="Cstdc4"
                     /codon_start=1
                     /product="stefin-3"
                     /protein_id="XP_038944837.1"
                     /db_xref="GeneID:100362978"
                     /db_xref="RGD:2323715"
                     /translation="MMPGGLSGARPATPEIYLADKVRALLEEKINAKYEKFKAIEYKS
                     QVVAGQNYFIKMDVGGGCFLHIKVFRGLSGEDNLELSDYQTNKTKNDELSYF"
ORIGIN      
        1 aaggtatctt tctttgtctt tacaacagtg tcagtaccct agtaagaagg attttgtttg
       61 tttttagatg tctatttcac ttttatctta atttttataa ttgtttaaat acagacgagc
      121 acaataaaat aacagatatc gttggtctgt cactcagaac tgacatgtat ccaggcctat
      181 ctctcttgag gaatcacccc agtaggcagg catagctgag tagtaaactt ctgtcacttt
      241 gctgtgccct attccctggt atccttagca cttcgccttt gacacatagc aagtcttcta
      301 aagtgtggcc tttcctttga catggttggg aaaatacctg gtaagttacc tatttgcctg
      361 caaacccaac acttccgaag caaagtcaga aagatcagac attctaggtt atgcctgtaa
      421 tcccagccct ctgcaggcgg aggcaggaga tgcctcctta aggtttatag taagttccag
      481 gataccctcg gctacatgaa gtaccttcta aaactgtaat cagtgagtat agtggtggat
      541 gtcattaatc caaacactga ggcagaggca gggtgatctc tgtgagtttg cagccagtgt
      601 ggagagagtg tgaattccaa gatatccaca cggtgtttcc cagagaaacc aagtctaaaa
      661 caaaactaaa taaaaacata aaacaagaga atgaagagca gcagaagaaa tgaagatgtt
      721 tgccatttgc ttctaaatat ttgcagttaa atgtttttga aactacaagt aaaaatccac
      781 tgtagacagt tttgttatct ttataaagtt gggtggatcc taagcaacca gccttgacat
      841 tattaagtat tctccttaag gaacacttca aggtttaaca tttttaggaa atctgattat
      901 acatgtcttt cctcagatga cacaacagga tgacattatg acacacactt gctcatgtcc
      961 cccaccacat ttccccccaa ctccactcag tatttcctct cagggatgct gtaagacttg
     1021 cctgaggcca cactcatttc cccagttcct ctgatactgt ggagatgata cattagagga
     1081 ggagtttaca catacctttc aaaccctgac tctcagtgct tgccggatca ttccttctca
     1141 gtgtcctgcc cagcaaagga gcaactcatc atcatgatgc ccggaggctt gtcaggggct
     1201 agacctgcca caccagaaat ctaccttgct gacaaagtca gagcattgct tgaagagaaa
     1261 atcaatgcaa aatatgaaaa attcaaagcc attgagtata aatctcaagt cgttgctgga
     1321 caaaattact tcattaagat ggatgtaggg ggtggttgtt tcctccacat aaaagtcttc
     1381 agaggactct ctggagaaga taatttggaa cttagtgatt accagactaa caaaaccaag
     1441 aatgatgagc tgtcctactt ctaagcagca aattctaaag taacctgatt cctctctttg
     1501 taagcagagg cagctgtcaa taaagaagca ttcataaaat aactgtttta ctccctcatt
     1561 actcagtatt gtgttaacct ggactac
//
