LOCUS       XM_039097690            1676 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus casein kinase 2 alpha 2 (Csnk2a2),
            transcript variant X1, mRNA.
ACCESSION   XM_039097690
VERSION     XM_039097690.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097690.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1676
                     /gene="Csnk2a2"
                     /note="casein kinase 2 alpha 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 58
                     ESTs, 2 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 137 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:307641"
                     /db_xref="RGD:1306882"
     CDS             213..1214
                     /gene="Csnk2a2"
                     /codon_start=1
                     /product="casein kinase II subunit alpha' isoform X1"
                     /protein_id="XP_038953618.1"
                     /db_xref="GeneID:307641"
                     /db_xref="RGD:1306882"
                     /translation="MPGPAAGSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVR
                     KLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILENLRGGTNIIKLIDTV
                     KDPVQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRLIDW
                     GLAEFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFH
                     GQDNYDQLVRIAKVLGTDDLYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHL
                     VSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQSQPCAENTVLSSGLTAAR"
ORIGIN      
        1 gcttggccgg cgcctcccgc gcccccggcc cgagcgtccg tccgtccgcc cgcccccgcg
       61 ggcccggcct ggcgcggacg cccgccgccg ccgcgctcct cctcctgctc gggcggtccg
      121 cggcccgccg cttcccgcgc ctgccgcccc gcgctccgcg ccgcgccgcc gccgccctcg
      181 gcgccccgcg gcgccccccg gtcccgcccg ccatgcccgg cccggccgcg ggcagtcggg
      241 cccgggtcta cgccgaggtg aacagcctga ggagccgcga gtactgggac tacgaagccc
      301 acgtcccgag ctggggtaat caagatgatt accaactggt tcgaaaactt ggtcggggca
      361 agtatagtga agtatttgag gccattaaca tcaccaacaa tgagagggtg gttgtaaaaa
      421 ttctcaagcc agtgaagaaa aagaagataa aacgagaggt taagattctg gagaaccttc
      481 gtggtggaac aaatatcatt aagctgattg acactgtaaa ggaccctgtg caactctacc
      541 agatcctgac tgactttgat atccggtttt atatgtatga actacttaaa gctctggatt
      601 actgccacag caagggaatc atgcacaggg atgtgaaacc tcacaatgtc atgatagatc
      661 accaacaaaa aaagctccgg ctgattgact ggggtttggc agaattctac catcctgctc
      721 aggagtacaa tgtccgagtg gcctcgaggt acttcaaggg accagagctc cttgtggact
      781 atcagatgta tgattacagc ttggatatgt ggagcttggg ctgtatgtta gcaagcatga
      841 tattccgaaa ggagccattc ttccatgggc aggacaacta tgaccagctt gttcgaattg
      901 ccaaggttct ggggacagat gacctgtatg ggtatctgaa gaagtaccac atagacctag
      961 acccacactt caatgatatc ctgggacagc attcacggaa gcgctgggaa aactttatcc
     1021 atagtgagaa cagacacctt gtcagccccg aggcccttga tcttcttgac aagctcctgc
     1081 ggtacgacca tcaacagaga ttgaccgcca aagaggccat ggagcacccg tacttctacc
     1141 cggtggtgaa ggagcagtcc cagccttgtg ctgagaacac cgtgctttcc agtggtctca
     1201 ccgcagcacg atgaagcctg gggaatcgac ggtctgttgc ggttcctccc acttttccat
     1261 aagcagaaca agaaccaaat caaaacgtct taacgcgtgt agcgagatca cgtcccgaga
     1321 gcagacacaa aatggtggca ggcttggcga acaggaacta gaccacccga agggcagccc
     1381 accaccgtaa atcagacctc acttccgaat gtaaaaggtt cacatgcctt tggcttcctg
     1441 ttgacttcct cctgacccag aaagcatggg aaatgtgaag ggtatgcaaa aatggttgtt
     1501 ggttactgtt gctctccgtg ccctcgaccc atcccgtggc tgcctgttgc tccagcaaac
     1561 cccaaggact agctgaccac agaccacaaa tgggatgggg gcagtgtatg gcatggtggg
     1621 cagttacata ttattttaaa agtatatata ttattgaata aaacgtttta aaagaa
//
