LOCUS       XM_006228355            1046 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Crx opposite strand transcript 1
            (Crxos1), mRNA.
ACCESSION   XM_006228355
VERSION     XM_006228355.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006228355.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006228355.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1046
                     /gene="Crxos1"
                     /note="Crx opposite strand transcript 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:292625"
                     /db_xref="RGD:1565487"
     CDS             103..459
                     /gene="Crxos1"
                     /codon_start=1
                     /product="cone-rod homeobox protein"
                     /protein_id="XP_006228417.2"
                     /db_xref="GeneID:292625"
                     /db_xref="RGD:1565487"
                     /translation="MEAFPRSLTSYTMAPLDQTYTWEQLWELEQHFKMEPYPDLQDRK
                     VMATRLKLKEEQVEAWFIQRSLEQETRPRRLQQSARDDNSSATHKALRCQPTSWKYRL
                     VPINAPESSTSCRHSC"
ORIGIN      
        1 taggagagtc cctgctgaat gggtccaaca ccgccctgag atgtaatcct aaattcatag
       61 tacatagatc ttcaatcaca cctgaagtga gcaacagatg agatggaagc atttccgcgt
      121 tctctgacct cctataccat ggctcccctt gaccagacgt acacttggga gcagctttgg
      181 gagctggaac aacatttcaa gatggaacca tacccggacc tccaggatcg aaaagtcatg
      241 gccaccagac tcaaactgaa ggaggaacag gttgaggctt ggttcatcca gcgatccttg
      301 gagcaggaga cgcgcccccg caggctgcag cagtctgccc gggatgataa ctcttctgct
      361 acccacaaag ccctccgctg ccagccgaca agctggaagt acaggctcgt tcccatcaac
      421 gccccggagt cctcaaccag ctgcaggcac agctgctgat cctccttccc cagggggcca
      481 cttcaacatg tagcacaaaa acctccctca cgacacccct cctttccaga ctcctagctg
      541 caccagacac gacaaatggt ggatgcattc cagaaacctc agggtcggtg tctgaatacc
      601 tgggtgccct gacagatggc attggtcaga aatggtgacc aatctctgag ggaagcctgt
      661 ggttccttct tctaacagcc tctcctcaaa ggtgagctat caactcaatt acgtaggaca
      721 gtatgacacc gatgtcttgc ctcctttccc atggcctgat tacagactaa tatatactgc
      781 cagaaccacc attttccatg agattaacta gttagttaac acagctagct ctttttttcc
      841 tctgtgacct tgatcaatca atcaggccaa taagtgtgtg tgtgtgtgtg tgtgtgtgtg
      901 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtt ttattggggc ttctgaggca cctgcttggg
      961 gatttagatc tgggagtggg tcactggtaa aatgaaacta ttgattaata aaaattgatt
     1021 tttttaaaaa attttgtgca ttaaaa
//
