LOCUS       NM_134401               2538 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus cartilage acidic protein 1 (Crtac1), mRNA.
ACCESSION   NM_134401 XM_001059110 XM_001059159 XM_001064183 XM_574670
VERSION     NM_134401.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Sato Y, Iketani M, Kurihara Y, Yamaguchi M, Yamashita N, Nakamura
            F, Arie Y, Kawasaki T, Hirata T, Abe T, Kiyonari H, Strittmatter
            SM, Goshima Y and Takei K.
  TITLE     Cartilage acidic protein-1B (LOTUS), an endogenous Nogo receptor
            antagonist for axon tract formation
  JOURNAL   Science 333 (6043), 769-773 (2011)
   PUBMED   21817055
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB692164.1, CO401990.1, BC089944.1 and DV714989.1.
            
            On or before Aug 28, 2008 this sequence version replaced
            XM_574670.2, XM_001064183.1, XM_001059110.1, XM_001059159.1,
            NM_134401.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132303, SAMEA5760383
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-374               CB692164.1         1-374
            375-897             CO401990.1         109-631
            898-2058            BC089944.1         429-1589
            2059-2538           DV714989.1         73-552
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..2538
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /note="cartilage acidic protein 1"
                     /db_xref="GeneID:171438"
                     /db_xref="RGD:621085"
     exon            1..113
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..2030
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /codon_start=1
                     /product="cartilage acidic protein 1 precursor"
                     /protein_id="NP_599228.2"
                     /db_xref="GeneID:171438"
                     /db_xref="RGD:621085"
                     /translation="MAPSADPGMVRMALLLLPPLWLLPLTGGSQRAEPMFTAVTNSVL
                     PPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYNRAQSRLVNIAVDERS
                     SPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWED
                     ILSDDINVARGVASLFAGRSVACVDRMGSGRYSIYIANYAYGDVGPDALIEMDPEASD
                     LSRGILALRDVAAEAGVSKYTAGRGVSVGPILSNSASDIFCDNENGPNFLFHNQGNGT
                     FVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRD
                     IASPKFSTPSPVRTVIAADFDNDQELEVFFNNIAYRSSSANRLFRVIRREHGDPLIEE
                     LNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVV
                     PRTRFGAFARGAKVVLYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGRDEASSVEVTW
                     PDGKMLSRSVANREMNSVLEILYPRDEDKLQNTAPLECGQGFSQQDNGHCMDTNECIQ
                     FPFVCPRDKPVCVNTYGSYRCRTNKRCSRGYEPNEDGTACVAQVAFLGGYSSAAFRLS
                     EPLSQASYLSLGLGLCLQFYAL"
     exon            114..316
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            317..513
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            514..650
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            651..807
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            808..942
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1088
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1225
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1226..1308
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1409
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1578
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1579..1724
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..1767
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1768..1911
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
     exon            1912..2538
                     /gene="Crtac1"
                     /gene_synonym="W307"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctgcaagg cggcggcgcc ggcggcagag gcggcagtga gcgccagcgc tccgacgccc
       61 ccaggcggtg gggctgagag agccagagga tggctccgag cgctgacccg ggcatggtca
      121 ggatggcttt gctcctgctg ccacccctgt ggcttctgcc tctcactggg ggatcccaga
      181 gggctgagcc catgttcact gcggtcacca actcagttct gccccccgac tatgacagca
      241 accccaccca gctcaactac ggagtggcag tgacggatgt ggaccacgat ggggacttcg
      301 agatcgtcgt ggcagggtac aatggcccca acctggtcct gaagtacaac cgagcccaga
      361 gtcggctggt gaacatcgca gtggatgagc gcagctcacc ctactatgct ctgagagatc
      421 ggcaagggaa tgccattggg gtcacagcct gtgacatcga tggggatggc cgtgaggaga
      481 tctactttct caacaccaat aacgccttct caggtgtggc cacgtacaca gacaagttgt
      541 tcaaatttcg aaataaccgg tgggaagaca tcctgagtga tgacatcaac gtggcccgtg
      601 gagtggccag cctctttgca ggacgctcag tggcctgcgt ggacagaatg ggctccggac
      661 gatattctat ctacatagcg aactatgcct atggtgatgt ggggcctgat gccctcatcg
      721 aaatggaccc tgaggccagt gacctgtccc gggggatcct agcactcagg gacgtggctg
      781 ctgaggctgg ggtcagcaag tacacagcgg gccggggtgt cagcgtgggc cccatcctca
      841 gcaacagtgc ctcagatatc ttctgtgaca atgagaatgg gcccaacttc ctcttccaca
      901 accaaggcaa tggtaccttc gtggatgctg cagctagtgc cggtgtagac gaccctcatc
      961 agcatggccg aggtgtggcc ctggcagatt tcaaccgtga cggcaaagta gacatcgttt
     1021 atggcaactg gaatggccca caccgcctct atctgcagat gagtgctcac gggaaggtcc
     1081 gatttaggga cattgcttca cccaagttct ccacgccctc ccctgtgcga actgtcattg
     1141 ctgccgactt cgacaatgac caggaactgg aagtcttctt caacaacatc gcctaccgca
     1201 gctcctcagc caatcgcctt ttccgggtta tccgcaggga gcatggggat cctctcatcg
     1261 aggagctcaa tcctggtgat gccctagagc ctgagggccg gggtacaggg ggcgtagtga
     1321 ccgacttcga tggtgatggg atgctggacc tcatcttgtc acatggagag tccatggctc
     1381 agccactgtc tgtcttccgg ggaaatcagg gcttcagcaa caactggctg cgtgtggtgc
     1441 cacgcactcg gttcggagcc ttcgccaggg gcgccaaggt tgtactctac accaagaaga
     1501 gtggggcgca cctacggatc attgatgggg gctccggcta cctgtgtgaa atggagcccg
     1561 tggcacattt tggcctggga agggacgaag ccagcagtgt agaggtgacg tggccagatg
     1621 gcaagatgct gagccgaagt gtggccaaca gggagatgaa ctcggtgttg gagatcctct
     1681 acccccggga tgaggacaaa cttcagaaca cagccccact agagtgcggc caaggattct
     1741 cccagcagga caatggccat tgcatggaca ccaatgaatg catccagttc ccatttgtat
     1801 gtcctcgaga taaacccgtg tgcgtcaaca cctacggaag ctacaggtgc cggaccaata
     1861 aaagatgcag tcggggctat gagcccaacg aagatggcac agcttgcgtg gctcaagtgg
     1921 cctttctagg tgggtattcc tcggctgcct ttagactctc tgagcctctc tctcaggctt
     1981 catatctttc tctaggccta ggactctgcc ttcaattcta tgcactttaa attccatcaa
     2041 taaaggaaaa aaatctaaca acctttgtgg aaaaactata tctctcctgc tgcctacctc
     2101 tctccacacc caatagattc tgccacgtgc tcctttgaat ggacagcagg ggtggccatc
     2161 tttgaaaagg gaagtttggg agacactaat gggaccttag ttgttggtga agcctttctt
     2221 tgcatgtttt ctgagaaaac agaaaaggaa agtatctcct ctacacccac ccctcattcc
     2281 atcagaagaa ccaagagagc ccatgagcgt catctccacg agcgtcttat tttgccctta
     2341 acaaagatgg ctcccaggtg gttgcttgct cattgattca gtaatgtatc atgtgcctgc
     2401 tgattttggc ctgtgctgtt gctgctttgt acaacttgat ttcctatgat tacaaaagcc
     2461 ttattgggtt ggtggtggcg acgggaaggg aaagggtggc cctttgggac tgttgataaa
     2521 aaaaaatgct taagtttg
//
