LOCUS       XM_017597599            8316 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cramped chromatin regulator homolog 1
            (Cramp1), transcript variant X1, mRNA.
ACCESSION   XM_017597599
VERSION     XM_017597599.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597599.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597599.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8316
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8316
                     /gene="Cramp1"
                     /note="cramped chromatin regulator homolog 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 7 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287127"
                     /db_xref="RGD:1311948"
     CDS             888..4907
                     /gene="Cramp1"
                     /codon_start=1
                     /product="protein cramped-like isoform X1"
                     /protein_id="XP_017453088.1"
                     /db_xref="GeneID:287127"
                     /db_xref="RGD:1311948"
                     /translation="MRGVVSSSSISRLGRFPECKPLSCMPALEGAAVLAHGALGAPRA
                     ARAVAIGRMTVKLGDAGSGEEGLKKLGKRTADEESLDGEGPGGADAADSSSTKRDGQT
                     PRAAGAPAPPRGLPTPSPPQGSPQDQHHFLRSSVRPQSKRPRKDAPCAVGSGGASGSG
                     TRGKGSDGGASSSGNVSGVASVTPAGGSRSSSRNIGSSGPEKEEGKKVRRQWESWSTE
                     DKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVRHFYYRTWHKITKYI
                     DFDNVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYKGR
                     NLRIKAPMCRALKKLCDPDGLSDEEDQKPVRLPLKVPVELQPRNNHAWARVQSLAQNP
                     RLRMIVELHRKVSSLIEFLKQKWALHEVRIRKTLEERQLQGSSTVQTQEKVALHLFPG
                     ENCTLTPLPGVARVVHSKAFCTVHWQEGGRCKQGTKDTHSLPPAQILGIQSGQGIARG
                     QLKCQRSSAEGKGGGRPLPTADASQSSGESSPESAPGEGAAPSLSSPDVPDRPSHGPQ
                     DSGSQLEKTPGTALTVGRDSPTQESGALPCSCGQPPDLEDELSLLDPFPRYLKSCHDL
                     IIPEQCRCADTQSGREHPPLGRVASPEALLPISSEVADNAPPGPDPQPGSDTQPDTRL
                     QSDTCTKELVSACPEESQEKSSPSEPLLSQGQPATRPSKEVPASQLAQQLREEGWSLQ
                     TSESLTLAEVYLMMGKPTKLQLEYDWLAVLGPESQAPTAQGQTALSRSTPSALHQQRL
                     LNCLLRLISTEVHPKMAFEANTASTASVRPTQEEQSTTPPGKVVTISSRSPRCSRNPS
                     TLRSNKSFPSGSAPCSPGLRNPPRPLLVAGPSSTGSSDSDGGLFAVPTTLPPNSRHGK
                     LFSPSKEAELTFRQHLDSISIQSDFFSPKPKKLRKRHLRKPLVVQRTLLPRPSENQSH
                     NVCSFSILSNSPIAGRGWFRPIQSSLTKAALSRPIVPKVLPSQATSHLPSAIDLAAQS
                     AGIIPGSPLPVLDPDGSSGVSPLSSEQAATAISGQGDTGPHQNRDPVTAVRGTNDPFI
                     GVSRPEQEPMTDDFQQGSSVLTLPELSKANLHNGLSIPVPSSEGSSTRLSPPNVSALL
                     DISLPGPPEDVLSQGEPATQISDSIIEIAISSGQYSEGVPLSPAKLNGSDSSKSLPSP
                     SSSPQPNWIASPTHDPQWYPSDSTDSSLSSLFASFISPEKSRKMLPTTVGANSGTSLL
                     GPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSITEPGR
                     REVLFDGGGGGNPVGDLSQ"
ORIGIN      
        1 tgtggagccg ggacgaggcc cgcagtgccc gcgcctccca cggtcaggaa gtgacgggtt
       61 tcggtgacgg actccatagg agtccaccgc cgctggggaa cgaccggaat gcgcctgggg
      121 acacggcctg gcgcgccggc gagtgggtcc tgttggactg atgtattttg tttggtggcg
      181 ctggcagtgc tggttctggg aatgggtttc cgctccctag cacaatgaca gggttttggg
      241 aaccttggtg agggggttag aagtgaatag attcgaagag aagtcttgtg tcataaagtc
      301 atttagcgtg agtttgtgtc ttgagtggtt ctgtgccaga gttttcttaa ggtagtatat
      361 gaaagatcag tgccaaacag gaaaactgca caccattttt ggcagcacca ttttatggtg
      421 ttacttcgag ttttacatcc cggtctttac cttcaatctt tgtgtgtgtt tgtgtttgtg
      481 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtatt ggtgcctagc tctatctggt
      541 tttcttatta aatacaatgt tttcaacagt tgtgttgaac ctagtgtctg ctgaagaacg
      601 cagtgtttct ctgtcctgct tcatcacgta cacagcctgt gcttaagatg ttggaatgta
      661 ccagaacttt agtttattct gagtataact tctcctggct acagacaatt attattttgt
      721 ttgtcgatat tttgtgacag tggtaagagt taaagcaaga attttgttgt ttacagtatt
      781 gtttacatag tgcacttccg attcttgaaa tccgactgga acataacagt gtttgctgtc
      841 acttttccag tgttccctaa cctactccgt gcaacaggct ttgttgaatg agaggtgtag
      901 tcagttcatc ttccatctcc cgcctgggaa ggttcccgga gtgcaagcct ctctcttgca
      961 tgccagcttt ggagggagcg gcagttttgg cccatggagc actaggggct ccgagggcag
     1021 cgcgggccgt tgcaataggc aggatgacag tgaagttggg cgacgccggc agcggggagg
     1081 aagggctaaa gaagctgggc aagcggacgg ccgatgagga gtctctggac ggagaggggc
     1141 ccggcggtgc ggacgcggca gacagcagca gcacaaagag ggacgggcag acccctcggg
     1201 ccgccggagc ccccgcacca cccagagggt taccgacccc gtccccacca cagggcagcc
     1261 cccaggacca gcaccatttc ctaaggtcca gcgtgcgacc acagagcaag aggcccagga
     1321 aggacgcacc ctgtgctgtg ggcagtggtg gtgccagcgg ttccgggacg cgaggaaaag
     1381 gaagtgacgg tggcgcatca tcttcaggaa acgtgtctgg ggttgcctct gtcacccctg
     1441 caggaggctc acgctcctcc tcccggaaca taggatcttc agggcctgag aaggaagaag
     1501 gaaagaaggt ccggaggcag tgggagtcgt ggagcacaga ggacaagaac accttctttg
     1561 aaggactgta tgagcatgga aaagactttg aagccattca gaacaacatc gctctgaagt
     1621 acaagaagaa gggcaagcct gcaagcatgg tgaagaacaa agagcaggtc cggcatttct
     1681 actaccgcac ctggcacaag attaccaaat acattgactt tgacaatgtg ttctctcgag
     1741 ggctgaagaa atcatcccag gaactctatg gtctcatctg ctatggcgag ctacgcaaga
     1801 agattggggg ttgcatggat gacaagaacg caacaaagtt gaatgaactc attcaggttg
     1861 gagctaccac agtacgttat aaagggagaa atctccggat caaggcaccc atgtgccggg
     1921 ccctaaagaa gctctgcgat ccagacggtc tgagtgatga agaggaccag aaaccagtgc
     1981 gcctccccct gaaagttcct gtagaattac aaccacggaa caaccatgcc tgggcacgag
     2041 tacagagcct ggcccagaac ccacgtctca ggatgattgt ggagctgcat cgaaaagtct
     2101 ctagcctcat tgagttcctg aagcagaagt gggcactcca tgaagtacga attcggaaga
     2161 cacttgagga gaggcagctg cagggctcaa gcacagtgca gacccaggag aaggtggcat
     2221 tgcacctgtt cccaggcgag aactgcacac tgacaccact accgggtgta gcccgtgtgg
     2281 tacactccaa ggccttctgc actgtacact ggcaagaggg tggccggtgc aaacagggca
     2341 ccaaggacac acactcactg cctccagctc agatcctggg catccagagt ggacagggaa
     2401 tagcccgggg ccagctgaag tgccagagga gcagtgctga aggcaagggt gggggacgac
     2461 cccttcccac tgcagatgct tcacagagtt caggggaaag ttcccctgag agtgctcctg
     2521 gagagggagc agctccaagt ctgagcagcc cggatgtccc tgacaggccc tctcatgggc
     2581 cccaggattc tggatcacag cttgagaaga cccctgggac agcccttaca gtgggtaggg
     2641 acagccctac tcaagaatct ggggccctgc cgtgttcctg cggccagccc ccagacttgg
     2701 aagatgaact ctcactcctt gacccctttc cccgatacct gaagtcttgc catgatctca
     2761 tcatcccaga gcagtgccgc tgtgcagaca cacagtctgg gagagagcac cctcctcttg
     2821 gcagggtagc ttccccagag gccctcctac ccatcagcag tgaggttgct gacaatgctc
     2881 cccctggtcc ggaccctcaa cctggcagcg atactcaacc tgacaccagg cttcagtcag
     2941 atacttgtac taaagagcta gtgagtgcat gtcctgaaga gtcccaggag aaaagcagcc
     3001 cctcagaacc tctgttgtct cagggacagc ctgctaccag gccttccaag gaagtccctg
     3061 ccagccagct ggcccagcag ctacgtgaag aaggctggag cttgcagacc tctgagagcc
     3121 tcacactggc tgaagtctac ctcatgatgg gcaagccgac caaactgcag ctggagtatg
     3181 attggctagc tgtgctgggc ccggagagcc aggcacccac agcacaggga cagactgccc
     3241 tatcccgctc cactccctca gccctccacc agcagcgcct cctgaactgc cttctgaggc
     3301 tcatctctac tgaggtccac cccaagatgg cttttgaagc taacacagca tcaacagctt
     3361 cagtcaggcc cacccaggag gaacagtcca caaccccacc aggcaaggta gtgaccatca
     3421 gctctcggag tccccgctgt tctcgaaacc catctaccct ccgaagcaac aagagcttcc
     3481 catctggttc tgcaccttgc tccccaggtt tgagaaatcc cccaaggcct cttttggtgg
     3541 ctggcccctc cagcaccgga agcagtgact cagatggtgg cctctttgct gtcccaacga
     3601 ctttgccacc aaatagtcga catggaaagc tcttctctcc cagtaaggag gcggagctaa
     3661 cttttaggca gcacttggac tccatcagta tacagtcaga ctttttctca ccaaagccca
     3721 agaaactacg gaaacggcac ttacgaaagc cgctggtggt tcagaggaca ctgctcccta
     3781 gaccttctga aaaccagtcc cacaatgtgt gctccttctc catcctgtct aactctccta
     3841 tagctgggag aggctggttc cggcccatcc agtcttctct gaccaaagca gctctgtctc
     3901 gaccgatagt gcccaaggtc ctcccatctc aggccaccag tcacctgccc agtgccatcg
     3961 acttagcagc tcaaagcgct ggcatcatcc ctggaagtcc cttgccagtt ttagatcctg
     4021 atggttcatc tggcgtctct ccactgtctt cagaacaagc agccactgcc atctcggggc
     4081 agggtgacac tggaccacac cagaacagag accctgttac agctgtaagg ggcacgaatg
     4141 acccatttat cggtgtttca agaccagaac aggagccaat gacagacgac ttccagcagg
     4201 gatcatctgt tctgacctta cctgagctgt ctaaggctaa tctccacaat ggcctgtcca
     4261 tacctgtacc ctcatcagag ggctccagca cccgtctctc cccacccaat gtttctgcac
     4321 ttctggacat ttccctccct ggcccacctg aggatgttct ctcccaggga gaacctgcca
     4381 cacagatcag cgactccatc attgaaattg ccatcagctc tggacagtac agtgaaggag
     4441 ttcctctttc tccagcaaaa ctgaacggca gtgacagttc caagagtctt ccctccccat
     4501 ccagcagccc ccagcccaac tggattgcct ctcccactca tgacccccag tggtacccca
     4561 gtgactctac ggattcttcg ctcagcagct tgtttgccag cttcatatct ccagagaaga
     4621 gcagaaagat gctaccaact actgttgggg ccaacagtgg cacatctttg cttggcccta
     4681 gcttgttgga tggaaattca agggactcat ttgtgtctag gtctctggct gatgttgcag
     4741 aagtggtgga ttcccagttg gtgtgcatga tgaatgagaa cagcattgac tacatatctc
     4801 ggtttaatga cctggcccaa gaattgtcca tcactgagcc tggccgccgg gaggttcttt
     4861 ttgatggtgg aggaggtggt aatcctgttg gtgacctctc tcagtgactg tgcttcgtga
     4921 cacaggcatc ctggaatcca caagggaggt ctatggagca gaccacatga aacctgtctg
     4981 catcagagag aaagtcaagt ccagaatcct gagaagacag tgaacaggag cacctctagc
     5041 agcataacaa tgtccacatg caagcagagg ttgtaccatc cacagaggcc agggcaagct
     5101 ggcctgagaa gggtagacct cagaagtcct ttgggtgttg cagcccttgt agtcttgtag
     5161 cctgtgtgcc atcctgactg tatgtctgtg tgttgagcct tccagagggg ctcctccttg
     5221 caagaaacat gcctaatgtt cattttgtct ttggagctgt tatcctattt gaagggaggc
     5281 cacagccact gctgctttct ttctgatatc cttttttcca cttggctgtt ctgtctgcag
     5341 tgatgttgca agggacaatg agtatagacc agtcttcttt tctggttgta tcttgaacct
     5401 aagacacttc ctggatgcct tgaccatgaa gcagagaagg gtcccagagt catgttgcta
     5461 atgttatctt cccaagatta ctaaccctca cctagtgctt cctactcaaa ccatccagag
     5521 gtttggttct tcctggcata aggaggagga ggttgtaaag ctggttggga atggtttcct
     5581 tgcagttaaa gaattgggag acggacaagg aatagtaaga gtcctctatg taggtggctc
     5641 tgctctcaac ctgtgcttag tcctagttct ttctaagtga tctaagatac cattcctctc
     5701 tactggcctg acccctaccc ccacccccaa atgcacctct atgtcttcag attttatgcg
     5761 tgcttaaatt tttcatgtgt tattgctggt atctgagggc tgtttctctt cctgttctgg
     5821 gacccaagca gggtttagat gtcagggtgt aggaagagct cacagcttgt tgatttttag
     5881 cagctctttt atggagtcca gcggcggtca caattgtcat gattgggcca ttgtgcctag
     5941 agtgatgcca aaaagagttc cacaaccctt ccttgccctt tagtaggtcc ttgcaacatg
     6001 gtcactcctg ctgtacctag gacgtcagat agccatgact gtagttcttg gtgaacaggt
     6061 gacccctgca ctagctcact ctccacatag tagccagggc tgactccccc cccccccttt
     6121 ttttttttcc ctgagacagg gtttctctgt gtaaccctgg ctatcctata acttgatttg
     6181 tagaccagga tgggctggag atccatttgt ctctgcctcc tgagtgctgg gctaaaagtc
     6241 atgtatgacc atacctagct tgccaggccc tgtataactc ctaaaactgc cacctctgcc
     6301 ttccacctct tttttttttc ttcttttttt tttttttttt tccagagctg gggaccgaac
     6361 ccagggcctt gcgcttgcta ggcaagcgct ctaccactga gctaaatccc caacccctgc
     6421 cttccacctc ttctagtctc cttcctcgaa cagtagtact taagaccagc ccagaccctt
     6481 acttctctcc ttctgcaatg aagaaaggga tggaaatgtc ccttttggga cacctgatcc
     6541 agttgtttca ctggctacta caaactctac aatgcaggct gtactccaga aacgagtaca
     6601 ggggctcttg acagtaaatt ccgtcacctc ccaggatctt cctgcctctt gtactggaaa
     6661 ggatctgccc cagatgctgg catgtcgacc cctacatctg ctaaaggtca aactgttgga
     6721 tgaggagagc agtagcatat ggtgccgtta agactatggt aaagtagcca gtgtgtctct
     6781 tcacccagtt gtgtgctttc agcaatgcct tacttagctg aaggcattta gatcttggga
     6841 ctgtagactg gtgaggagac caggctcagc ttagaccgct gctagctgcc cctcctttgt
     6901 ttcagatatt ctctcccaca acatgaataa gcatgggtgc ttgtagaatc ctggtaactg
     6961 agcatgttag gtagttggtt cccatcagcc agtgaatgct gtgaggcata taatagtctg
     7021 tgccgtctaa agggagttga gactgctttg aggaacagag acctcagccc ttgtcgccca
     7081 gtagcaagca aggtatccat cgaatggact ggtgctttac tctaaggaag ctgacaggat
     7141 tccagaagat tccactgctt ctttaacagc cagccatatt tgtttgctca ttgtcgccat
     7201 attaaaggac agatggtggt ggcatttgta gcagagaatc agtggatgta acttccccca
     7261 gcctaatcaa atatctatac atgaaacctg gaaactgcta aaggttggaa ttttgaaaaa
     7321 aagaaaccaa acaaaaccag caaggaagcc tcctaggatc tacatcttcc ttctcgtcct
     7381 ttccgacagt tttgatatcc atgttcactc gggcttcctt tcctcatggg aacttagtgt
     7441 gacatatatt tggttggtct ttgagaagat tttttttttt gctaatacta atgtttctta
     7501 gacatgttga ttcatctttt caaaagattg ggaacttgta tctggtgctt ggcatggact
     7561 gtgtcctaga gaagatagac actcaggcga gccgaagtcc atatgtcctg tcaggcatag
     7621 tacttgtcag ggagtggaac ttgggacatt tcatcatggt caactttttc ctaccctctt
     7681 ctttttcatt ccttgtcata gcctctgcta ggggaggtgt cattcagttt aatagcattt
     7741 ttaaccagac cacattatta aaaatggtca aaacaagttt agaaggaaat tgttttatgt
     7801 acttttaaaa caaatctccc agatgcattc atgaggaaat actgtacttt gtcttaattt
     7861 taaaaagaaa aaaaaaaacc ttaaaaaagg aacgaaaccc acagtatacc tttcccagag
     7921 gctagcctgt gaggtcagtc cagttttgga agcactgcac agccagaccc ttactggtta
     7981 gttagatcac tggctgcggg tgcccccggc aggcagaact cagtgctgtt tgctttgata
     8041 atcgttaagc catatcatct gaggtttccg gcttgagatg tgaatttgtt ttatagacta
     8101 taaatataca atgtatgtat aaagcagaat gcctgtcctt ctggttattt tttgtaccat
     8161 attgtaaatt acattattta ttctttacca attttttggg aataaaaggt gttttggtta
     8221 tttaataaac aaaaactgtt aaacttcggc taaaatttcc agttcggctt gtaaatgttt
     8281 ttattgtgca taaatacata ctaatacttc atctaa
//
