LOCUS       XM_006244862            4579 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CRACD like (Cracdl), transcript
            variant X1, mRNA.
ACCESSION   XM_006244862
VERSION     XM_006244862.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244862.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244862.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4579
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4579
                     /gene="Cracdl"
                     /note="CRACD like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 10 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301351"
                     /db_xref="RGD:1310819"
     CDS             487..3969
                     /gene="Cracdl"
                     /codon_start=1
                     /product="CRACD-like protein isoform X1"
                     /protein_id="XP_006244924.1"
                     /db_xref="GeneID:301351"
                     /db_xref="RGD:1310819"
                     /translation="MREAEACCTLRKMSAFYQCVRPDPSDLDMISTRVMDIKLREAAE
                     GLGEDSTGKKKSKFKTFKKLFGKKKRKETAPTGNSAWKQNPAKSEVITIEESGPVYDS
                     EDELEESRGTMGSRALSHDSIFFPESGQDPARPVRVFSQENVCDRIKALQLKIQCNVK
                     LGPPPPGGLPIKRAEETGMSSEDDGLPRSPPEMSLLHDVGPGPAIKILVSSSRPQSPD
                     HMSDASVSSRTLDGSLAPVVDFSHPPEFSSCLDNSAAKHKLLVKPRNQRSSKLRRLSS
                     RAQSECLSDLSWTLEEEDYEEKSLFHVSMEESPDVRQRDLMPGRRSEFGGPATLLSPG
                     GACARRARLQHSTAVSASMEEGGSLGNEPSSLPATPEVSEPMAVSVPGLESLSLLESS
                     PYHIPRVEIKKEELSTGGLCPLVESTSKEAPCGSGDVETPLSTDIPERDVVPSKEGSA
                     PPEGDQAFPEGDTTLPGGDTLPPEGNTTPPKGVMAPPERDISPSKDNMSPPKRIMAPP
                     ERDKSPSEGDVAPPKRIMAPPERDKSPSEGDVAPPKRIMAPPERDKSPSEGDVAPPKR
                     IMAPPERDKSPSEGDVTPPKRIMAPPERDKSPSEGDVAPPKGIMAPPEIDKSPSEGDV
                     APPKGIMEPPERDMLLPKGDIPPAKTITDTNLETPSDTERQDQSVQEEELTLVVPRPE
                     RATGTESSTIPAPSPPAPKSCLKHKTLVPSGSAAESPLKEPSLSVQDKAAVPPARHRP
                     TQAATSGGPERAAPGRKSDRSAEPQRSSVKRFSVTSSRARARASSSRLPEYSAHVPAG
                     GRAPLLRSGLAWRSEAALDDLQVPPKPPDRKTTGGDPQNSGDVGAGQAGPGKSLQDAE
                     SCAATLQEPAAGEDQSLFPVKLRSTSLSLKYRDSSAHEAKAIKRYSAEVRLEKGGLAL
                     LPKDEQSHVGAAPALRGSRSPNGQGKGKTRSPEQPGTKPPLPRKPLLQSLTLPYPAAG
                     PDTSPGESERLIPVNQPPEPRKEKSPHQGAEKGQPPAATGPGADGQPTPPWITMARQK
                     RRGAPDLPVNQEEKPGSRLQKTETGKQAKVAERVQESVKQGDFVRSKSFLMTPAKPPV
                     TQRQGSKLSLKEGLQRGISLSHQNLAAQAAATTEKELHQLKRASYASSDQPSWMELAR
                     KKSQAWSDMPQIIK"
ORIGIN      
        1 agtattattc caatagtctg atagccaaag ggaggggctg catgtctgtt taggtcctgt
       61 tcttcctgta agaggacaca gtcctgcccc tcagcctctg ccacctcccc ggtgaggacg
      121 gtgagctgga gtttgttgtg ttttgttctc tgtggtgtag cagcgattcc agtcaccgtg
      181 aggcaggtga caaccactcc agaccaactc cccaaggagt caggccaccc ccactccttg
      241 cccacaggag aaggaagtgc gtgtgcctct cagagagcag taactgcccg gtgcctgcac
      301 acctgcccaa gaagccccgg ggctccgtgg ttggcagaaa ccccacttcc tcatggctca
      361 gaagagttgc tgggggaaca ggggcaagaa ctcgtgccca gtgcccagtg gtgtcccaag
      421 agccccttgc ccctcaagag tggacagggt ggcccactct tcttcctgct gctagtcccc
      481 agaaggatga gagaagctga ggcttgctgt acgctcagga agatgtctgc cttctaccag
      541 tgcgtcaggc ctgatcccag tgacctggac atgatttcca caagggtgat ggacattaaa
      601 cttcgggagg ctgctgaagg ccttggggaa gacagcacag gaaagaaaaa gtccaaattt
      661 aaaacattta agaagctgtt tgggaagaag aagagaaagg aaacagcacc cacaggaaac
      721 agcgcctgga agcaaaatcc ggccaagagc gaggttatca ctatcgagga gtcgggccct
      781 gtgtatgact ctgaagatga actggaggag tccaggggca ccatgggcag ccgggccctc
      841 tcccacgaca gtattttctt tcctgaatcg ggacaggacc ctgctcggcc tgtgcgggtg
      901 ttctcccaag aaaatgtgtg tgaccggatc aaggctttgc agttaaagat acaatgtaat
      961 gtgaagttgg ggccaccgcc tccaggaggc cttcctatca agcgggcaga ggaaaccggc
     1021 atgagttctg aggatgacgg actgccccgg agtccaccag agatgtctct gctgcacgac
     1081 gtgggtccag gcccagctat aaagatcctg gtgtcctcat cccggccgca gtctcccgac
     1141 cacatgagcg atgcctccgt ctcgtctcgg accttggatg gcagcctggc acctgtggtt
     1201 gacttcagcc accctcctga attctcctcc tgcctggaca actctgcagc taaacacaag
     1261 ctgctggtga agccccgcaa ccagcgatca agtaaattaa ggcggctgtc ttcgagggca
     1321 cagtctgaat gcctgagtga tctgtcatgg accttagagg aggaagacta tgaagagaag
     1381 tcattgttcc atgtcagcat ggaagagagc ccagatgtta gacagcggga tttgatgcca
     1441 ggcagaaggt ccgagtttgg aggacctgca accttgctgt cacctggagg ggcctgtgcc
     1501 aggcgtgctc gcctacagca cagcacggca gtcagtgcca gcatggagga gggaggctct
     1561 cttggaaatg aaccctcaag cctcccggcc acgccagagg tcagcgagcc catggcggtc
     1621 tcagtcccag gcttagagtc cctatctctg ctagaaagtt ctccatacca tattcctcgt
     1681 gttgaaatca agaaggaaga gctgtccact ggaggcctgt gtcccctagt ggagagtaca
     1741 tcaaaggagg ctccttgtgg ttctggagat gtggaaaccc cactatctac tgatatccct
     1801 gagagggatg tggtaccttc caaggagggc tctgcccctc cagagggaga ccaagcattt
     1861 cctgaaggag acacaacact ccctggaggg gatactctac ctcctgaggg aaacacaaca
     1921 cctcccaagg gtgtcatggc acctcctgag agagacatat caccttccaa ggacaatatg
     1981 tcacctccca agaggatcat ggcaccccca gagagagaca agtcaccttc tgagggagat
     2041 gtggcacctc ccaagaggat catggcaccc ccagagagag acaagtcacc ttctgaggga
     2101 gatgtggcac ctcccaagag gatcatggca cccccagaga gagacaaatc accttctgag
     2161 ggagatgtgg cacctcccaa gaggatcatg gcacccccag agagagacaa gtcaccttct
     2221 gagggagatg tgacacctcc caagaggatc atggcacccc cagagagaga caagtcacct
     2281 tctgagggag atgtggcacc acctaaaggg atcatggcac ccccagagat agacaagtca
     2341 ccttctgagg gagatgtggc accacctaaa gggatcatgg agcctcctga gagggacatg
     2401 ttacttccaa agggagacat accacctgct aagactatca ctgataccaa cttggagacg
     2461 ccttcagata cagagagaca agaccaaagt gtccaggagg aggagttgac cctggtggta
     2521 cccaggcctg agagagcaac agggacagaa tcttccacaa ttcctgcccc aagccctccg
     2581 gcacccaaga gctgcctgaa gcacaaaacc ttggttccca gtgggtccgc cgcagagtct
     2641 cctctgaaag agcccagcct atcagtccag gacaaagcag ctgtgcctcc ggcccgccac
     2701 aggccaacac aggctgcaac ctcaggaggt ccagagaggg cagccccggg aagaaagagc
     2761 gaccgcagtg cggagccaca gcgcagcagc gttaagaggt tctctgtgac ctcgagcagg
     2821 gcacgtgccc gtgccagcag ctcccgcctt cccgaatatt ctgcgcatgt gcctgcaggg
     2881 ggacgggcac ccttgctgcg gagtggcctt gcctggagga gtgaggcagc acttgatgac
     2941 ctccaggtgc cgccaaaacc accggaccgg aagacaacgg gtggtgaccc tcaaaactca
     3001 ggggatgtgg gggccggcca ggcaggaccg ggcaagagcc tccaggatgc tgagtcttgt
     3061 gctgctacct tgcaggagcc agccgctggg gaggaccaga gcctcttccc agtcaagctg
     3121 cgctccacct cactctcact caaatacaga gacagctctg cccatgaggc caaagccatc
     3181 aagaggtaca gcgccgaagt caggttggag aaaggtggcc tggctctgct ccccaaggat
     3241 gaacagagcc atgtcggggc tgcccctgca ctgcgaggct ctaggtcccc caatgggcaa
     3301 gggaaaggaa agaccaggtc tcctgagcag cccggtacca agccacccct gcccaggaag
     3361 ccgcttctgc aaagccttac tttgccgtac ccagccgcag gcccggatac cagccctggg
     3421 gagtccgaga gactcatacc ggtcaaccag cctcccgagc ccaggaagga gaagtcgccc
     3481 catcagggag ctgaaaaggg tcagcctcct gcggctacag gtcctggggc tgatgggcaa
     3541 cccaccccac cctggataac catggcccgg cagaaacgga gaggagcccc agacctgcca
     3601 gtcaaccaag aagagaaacc tgggtcacgg ctccagaaga cagaaactgg aaagcaagcc
     3661 aaggtggccg agagagtcca ggagtctgtg aagcagggtg acttcgtccg aagcaaatct
     3721 ttcctgatga cccctgcaaa gccccctgtg acccagaggc aggggtcaaa gctgagcctc
     3781 aaggagggac tgcagagagg aatctcgctg tcccatcaga acttggcagc tcaggctgca
     3841 gccaccacag agaaggaact tcatcagctg aagagagcca gctatgctag ttccgatcag
     3901 ccatcctgga tggaactcgc cagaaagaaa tctcaagcct ggagcgacat gccccaaatc
     3961 ataaaataga ttggcagcct gctgatgaag gatgtccact gtatcgacga gccacttagt
     4021 tttaaactgc caataaatca tggcaggcag actgtgaaac ttaggattga tttttgtcaa
     4081 cgggttgcga gcagctcgga gaagagagag gaaccagggg gaacaaagaa gaccagcaga
     4141 cagcctcagt gccggagcca gaggggctgt ggcaagaatg ttgcaaagtc caggggcgcc
     4201 atccatggca agaatgttgc aaagtccagg ggcgccattc ctgagctgag ttgtcagcct
     4261 gagcctacga gtccccggtc tacgctgcct cttgccatca gccagtgcct ctggccaccg
     4321 tcttgccgtg gaccaccgtt ttgtgtttac taataagcat gatgtttatg gtaaagcagg
     4381 gatgcccttt tacaagagca gttacctaac aatccagttt cctgaagaaa cccaccccga
     4441 gaaggagagg aagggacgtg gcagggtttg tcaattcata gactgtttcc aaaaataatt
     4501 tttaaacttt tccactaggc acctgtgtcc cgaaccattg caaaatgcat tgcctgttta
     4561 ataaaaagtt tcaaacacg
//
