LOCUS       XM_039109299            2390 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus carnitine palmitoyltransferase 2
            (Cpt2), transcript variant X1, mRNA.
ACCESSION   XM_039109299
VERSION     XM_039109299.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109299.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2390
                     /gene="Cpt2"
                     /gene_synonym="CPTII"
                     /note="carnitine palmitoyltransferase 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 33 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     48 samples with support for all annotated introns"
                     /db_xref="GeneID:25413"
                     /db_xref="RGD:2398"
     CDS             143..1900
                     /gene="Cpt2"
                     /gene_synonym="CPTII"
                     /codon_start=1
                     /product="carnitine O-palmitoyltransferase 2,
                     mitochondrial isoform X1"
                     /protein_id="XP_038965227.1"
                     /db_xref="GeneID:25413"
                     /db_xref="RGD:2398"
                     /translation="MMPRLLFRAWPRCPSLVLGAPSRPLSAVSGPDDYLQHSIVPTMH
                     YQDSLPRLPIPKLEDTMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLLAQ
                     DKQNKHTSYISGPWFDMYLTARDSIVLNFNPFVAFNPDPKSEYNDQLTRATNLTVSAV
                     RFLKTLRAGLLEPEVFHLNPSKSDTDAFKRLIRFVPPSLSWYGAYLVNAYPLDMSQYF
                     RLFNSTRIPRPNRDELFTDTKARHLLILRKGHFYVFDVLDQDGNIVNPSEIQAHLKYI
                     LSDSSPVPEFPVAYLTSENRDVWAELRQKLIFDGNEETLKKVDSAVFCLCLDDFPMKD
                     LIHLSHTMLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHAWGDGVAVLRFFNEVFRDST
                     QTPAITPQSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLSIDSIQFQR
                     GGKEFLKKKQLSPDAVAQLAFQMAFLRQYGQTVATYESCSTAAFKHGRTETIRPASIF
                     TKRCSEAFVRDPSKHSVGELQHMMAECSKYHGQLTKEAAMGKARARALTDTCMLCAIW
                     QRPEDSTYLSSIWILHTSR"
ORIGIN      
        1 ccgcgcccgg aagtgccctg tgggcggagt tgaactggac gttaagtccc tgcgcggtgt
       61 ccggcgtccg agggcagcgg cctgcttgct caggaactcc ctcagccgcc gcgttctcta
      121 gccgccgttg ctgcccggga cgatgatgcc gcgcctgctg tttcgtgcct ggccccgctg
      181 cccctcgctt gtcctgggag cccctagtag gcccttaagt gctgtctcgg ggccggacga
      241 ttatctgcag cacagcatcg tgcccaccat gcactaccag gacagcctgc ccaggctgcc
      301 tatccctaaa cttgaagaca ccatgaagag atacctcaat gcacagaagc ctctcttgga
      361 tgacagccag ttcaggagaa cagaagcgtt gtgtaagaat tttgagactg gcgttgggaa
      421 ggagctgcat gcccacctgc ttgctcagga taagcagaat aagcacacca gctacatctc
      481 aggcccctgg ttcgatatgt atttaactgc tcgagactct atcgttttaa actttaatcc
      541 atttgtggca ttcaatccgg acccaaagtc tgagtataat gaccagctta ccagggcaac
      601 caacttgact gtttctgcag tccggtttct gaagacactt cgggctggcc ttttagaacc
      661 agaagtgttc cacttgaacc cttccaaaag tgacacagac gccttcaaaa gactcattcg
      721 ctttgttcct ccctctctgt cctggtatgg agcctacctg gtcaacgcat atcccctgga
      781 tatgtcccag tatttccggc ttttcaattc aactcgtata cccagaccca atcgtgatga
      841 actctttact gacaccaagg ctagacacct cctgatccta agaaaaggac atttctatgt
      901 ctttgatgtc ctcgatcaag atgggaacat tgtgaatccc tcagagattc aggcacatct
      961 aaagtacatt ctctcagaca gcagccctgt gcccgagttt cctgtggcat atctgaccag
     1021 tgagaaccga gatgtctggg cagagctcag acagaagttg atttttgatg gcaatgagga
     1081 aaccctgaag aaagtggact ctgctgtctt ctgcctctgc ctagatgact tcccgatgaa
     1141 ggatcttatt cacttgtcac acaccatgct gcacggcgat ggcacaaacc gctggtttga
     1201 taagtccttt aacctcattg tagccgagga cggcactgct gcagtccact tcgagcacgc
     1261 gtggggggat ggggtggcag tgcttaggtt tttcaatgaa gtgttcagag acagcactca
     1321 gacccctgcc atcactcccc agagccagcc tgccgccacc aactcctctg cgtctgtgga
     1381 gacgctcagc ttcaacctca gcggtgctct caaggctggc atcactgctg ccaaggagaa
     1441 gttcgacacc acggtgaaaa ccctcagcat tgactccatt cagttccaga gaggtggcaa
     1501 ggagttcctg aagaagaagc agctgagccc cgatgcggtg gcccagctgg ccttccagat
     1561 ggccttcctg agacagtatg gccagacggt ggctacctat gagtcctgca gcactgcagc
     1621 cttcaagcac ggccgcacag agactatccg cccagcctcc atctttacta agagatgctc
     1681 cgaggcgttt gtcagggacc cctccaagca cagtgtgggc gagcttcagc acatgatggc
     1741 tgagtgttcc aaataccatg gccagctgac caaagaagca gcgatgggta aggcacgggc
     1801 cagggctttg accgacactt gtatgctctg cgctatctgg caacggccag aggactcaac
     1861 ctacctgagc tctatctgga tcctgcatac cagcagatga accacaacat cctgtccacc
     1921 agcactctga acagcccagc agtgagcctt gggggctttg cccctgtggt ccctgatggc
     1981 tttggcattg catatgctgt tcacgatgac tggataggct gcaatgtctc ctcctactca
     2041 ggacgcaatg cccgagagtt tctccactgt gtccagaagt gcttggaaga cattttcgat
     2101 gctctagaag gcaaagccat caaaacttag cttcctagtc gctgaaaagc ctccattctt
     2161 cctcatgaac atggatgttc atgtagctgg aaggtgccat cttgtgccca acaaaactaa
     2221 tcccaaggtg cttccacagc cagtgctgca ggctgagctg gaagagccca actgaaggta
     2281 gtgagaggtc gcagctgtaa agccctcttt gttcaggaga tagggtttgg aaaactaact
     2341 cagctgtatt tattgtttaa atagaaataa aacctggtgt tgcttagaaa
//
