LOCUS       XM_039078738            6563 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cleavage and polyadenylation specific
            factor 6 (Cpsf6), transcript variant X4, mRNA.
ACCESSION   XM_039078738
VERSION     XM_039078738.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078738.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6563
                     /gene="Cpsf6"
                     /note="cleavage and polyadenylation specific factor 6;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 93 ESTs, 4 long SRA reads, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 246 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:299811"
                     /db_xref="RGD:1304640"
     CDS             82..1740
                     /gene="Cpsf6"
                     /codon_start=1
                     /product="cleavage and polyadenylation specificity factor
                     subunit 6 isoform X3"
                     /protein_id="XP_038934666.1"
                     /db_xref="GeneID:299811"
                     /db_xref="RGD:1304640"
                     /translation="MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNG
                     DAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVH
                     SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCN
                     KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGGSRAAFPQGGRGRGRFPGAVPGGDRFP
                     GPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPP
                     VLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP
                     LTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDR
                     GDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVT
                     AISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSR
                     RHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR"
ORIGIN      
        1 cccaccgcta gatccgctgc tgctgcctcg gcgggccgac ctgcaggagg cggcggcggc
       61 ggcggccgag gccgagggaa gatggcggac ggtgtggacc acatagacat ttacgcggat
      121 gtgggggaag agttcaacca ggaagcggaa tatggtgggc atgatcagat agatttgtat
      181 gatgatgtca tctctccatc tgcaaataat ggcgatgccc cagaagaccg ggactacatg
      241 gatactcttc caccaactgt tggtgatgat gtgggtaaag gggcagcacc aaacgttgtc
      301 tatacttaca ctggaaagag aatcgcattg tatattggaa atctaacatg gtggacaaca
      361 gatgaggacc taactgaagc agttcattct ttgggagtaa atgatatttt ggagataaaa
      421 ttttttgaaa atcgggcaaa tggacaatca aagggatttg cccttgttgg tgttggatct
      481 gaagcatctt ccaaaaagtt aatggatctt ttgcctaaaa gagaacttca cggtcagaat
      541 cctgttgtaa ctccatgcaa taaacagttc ctgagtcagt ttgaaatgca atccaggaaa
      601 actacacaat caggacaaat gtctggggaa ggtaaagctg gtcctccagg aggcggttca
      661 cgcgcagcat ttccacaagg tggtagagga cggggccgtt ttccaggggc tgttcctggt
      721 ggggacagat ttcctgggcc agcaggacca ggagggccac ctccaccttt cccagctgga
      781 cagactccac cacgtccacc tctaggtcca cctggcccac ctggcccccc aggtcctcca
      841 cctcccggtc aggttctgcc acctcctcta gcaggacctc ctaatcgagg agaccgccct
      901 ccaccaccag ttctttttcc tggacaacct tttgggcagc ctccgctggg tccacttcct
      961 cctgggcctc cacctccagt tccaggctac ggcccccctc caggtccacc gcctccacag
     1021 cagggaccac ctccacctcc aggccccttt ccacctcgac caccaggtcc actagggcct
     1081 ccccttacac ttgctcctcc tccacatctt ccgggaccac ctccaggtgc cccaccacca
     1141 gctccacatg tgaatcctgc ttttttccct ccaccaacta atagtggcat gccaacatca
     1201 gatagtcgag gtccaccgcc aacagaccca tatggccgac ctccaccata tgataggggt
     1261 gactatggtc cccctgggag ggaaatggat actgcaagaa cacctctgag tgaagctgag
     1321 tttgaagaaa tcatgaatag aaatcgggca atctctagca gtgctatttc aagagctgta
     1381 tctgatgcta gtgctggtga ttatgggagt gctattgaaa cattggtaac agcaatttct
     1441 ctaattaaac aatccaaagt atctgccgac gatcgctgca aagttcttat tagctctttg
     1501 caagactgcc ttcatggaat tgagtccaag tcctatgggt ctggatcaag aagacgtgaa
     1561 cgatcaagag aaagggacca tagtagatca cgggaaaaga gtcgacgtca taaatctcgg
     1621 agtagagatc gccatgatga ttattacaga gagagaagca gagagcgaga gagacaccgg
     1681 gatcgcgatc gggatcgtga ccgggagcgc gaccgagagc gagaataccg tcatcgttag
     1741 aagctgaagg aagaggaaca ccttccaaga caaagcagtc ttcacgggga aagtgacgct
     1801 tgtccagcag tttgcttctt gattgaactg aacctgtaag gattcatgga taaactgaac
     1861 aggaatagat ctgaataaag caaatctgca taaatggtaa ccagtagctc tacttttatt
     1921 ttttatgttg cttaactgtt ttatttgaag gaaactgtgt gatttaaaaa gttaatagct
     1981 tttgcaactt tattactggt tatatatttg gccattataa tgtgcaagca attggaaaaa
     2041 gtcaagtaaa tgcttgtttt tatagtagtt tgttcttgtt aaaatgttca tatgataatg
     2101 tctgtaaaca gcaccaattt gattacaata gatgtagtgt tgtaataaac tgtttaatgg
     2161 ggctgatgtg taaagctgtt caagttattt gatgtttaca cctcagggaa agtcttgtgt
     2221 tcagcaatat ctaaagataa tgttactatg acaacatttt tactgtcctt taaaaaagca
     2281 ttgcaatagc gtgtttggat atgcatcaat ctaatcttgc gttcagtgaa ttaaacatga
     2341 ctaattaagt gtctattgcc cttgattttg atattagaat aggtgattac atgggtattt
     2401 aatatttcta tattctgctt ttctagctgt ttttacctag ttagcttgtg attttgctga
     2461 atggtatgta aacgtgtaaa aactgaaatc tgacagagca atccattcaa tgtgttaggg
     2521 gtcaaaaaat tgaaggttgt aacatttttg gtaaaaattc atgtatttgc tacagtagtg
     2581 cagcttaatt acaacccaga tatactgaaa tgaaaattgt gaactgctag cttttaagat
     2641 agattttgat aattctgatt tcatgcagta atttactgtt tcatgctgat ggtgccatag
     2701 gcagtgtaat tatggccaca cagcaagata aatgagtaaa gaaagcccta gtattgtact
     2761 tgataaaaat ttctgagggg tatgatgttt attaacattg ggttgtattc ttcagtgtga
     2821 ataatgaaaa attatagtta cactgtcttc atggttcgag gaattctgtg tatattcctg
     2881 taactttgtt gatctatgct tgattagagt tagttatcag ttgttttttt ttttttaatc
     2941 cagccttaat aaaaggttgt attaaacaca cctggctagc atgtgttctg caaaattagc
     3001 agaaacaaac tgttaatttg attgcctatt tttataggaa gataaaaatc tgaattccta
     3061 aagaattttt agataaagtc cttaagctaa tttgtgttaa atatgtttta aaagatctta
     3121 aagtttacct aaatttaagc gcagtgccta aggcatgtac cataggtcga gagtgtgcag
     3181 cttgagacat ttgtactttt cttcttcagt ttcatccttt ctgcttttaa aatactcaaa
     3241 aatatccata ccactgtcag ttcattttaa aacattttgt gagcagagta ttttttgcaa
     3301 gggatcattg gtgtttaccc aaactgttgt tagctctcag aaatgatttt tcttaagttt
     3361 taatcttgtt gaaatgcaat taccttttga tttgagagtt gtatcaaaat ctattttgtt
     3421 ttgtatatag gtattgtaag tttttgtcat ttcttagctt ttttaatagt ttaattacaa
     3481 taccctaatg tgaagccgtg tggacataca tgtgtttaca agggagatta agattagttg
     3541 atagtgagat taaaaggtaa gtacaatgcc catagataga acttctctga acatttttaa
     3601 aatggaatca aaaatacata tacttgaaat gaaactggag attttgtact aattttaatc
     3661 ctttattacc tttttttctt ttttaaaaat gagttggaac tcttattgct ctctgtatgt
     3721 caccctcttg cccagcttat tctattacct gactttggac gcagacagag tggactagca
     3781 ttgtttgctg ctgctagtcc attattttaa gtgttgtcag gaagaaataa aataaccttg
     3841 gtttgtctag ttttacagtg tctcctccct gataacacat gaatgtcagc agtaaaagta
     3901 aacattgcaa accttgtttt atttgtcaaa gccttctgtt gttgaggagt cagtttcatt
     3961 tgaaaactgg tttttaatgt gtaaaaacaa tccaaagaga taaaatttta caaagacacc
     4021 aaaaaaaaaa aaaaaaaaaa ggagagagag agagatagag acaggcagac agacaggcag
     4081 gcaaatgaac taaagagaag aaaaagtcag aagaaaaaag gaactaggga gagtttttaa
     4141 gaaattgtgg ttcatatagt ggcagtgaaa gcaagcttga gtttgtcttg aatcctagca
     4201 ttgcctagtg ctgtgcagtc acattccttg caactagtag ttaaaattcc agatgcttgg
     4261 taaagcgccc acatggtatt tctcctggag cagcactttg aattcaatat actgctttga
     4321 ggtaaaggaa atacatttgt agaaaggatt ctttcagtgt acatttacat gtgtgtatgt
     4381 tttgtcagct ttcatcagca agatgagcaa gattttagtg acttgctata gctattgatc
     4441 atacatgtta ggccatttaa tgtctcctta acctataatc ttaagcagtt aactacaatt
     4501 tggaatttac aaatagcatg tagcttaagg tattattttg atttgattct cctatggaga
     4561 ctgttgcttt agtttttact agtttaaagt cagttctaaa aataaacatg gaagttttca
     4621 tgaacgttgt ataatatttt atagtaaagg ggggaaattg ttgaaaaggg taagactttc
     4681 tctttccctg tgttgaaatg tgccaatagc ctaagtacat tctgtttcat acaatgagat
     4741 gctactgcag gactccgatt ggagtgctct taacatttta gttttgctac ccaaatggtc
     4801 attgcattgt ttgtatcttg caaggtggcc ccaatattgt gttttaagct tcagcttaag
     4861 ttattttaag aggaagttta tgttctgatt ctttactgag aatacagtgt tgagattctt
     4921 gctattgcac agataaactg atttttaaat tttattcatg aacttcattt gcatcccatg
     4981 ggcctctgta aatgtttccc ctggttgtgt gttcttacta aatgcacgct ttttcattgt
     5041 acatactaga catttttttg tgctaaaata tattaagtag ggtttttgta gcaaagcatt
     5101 ctatttttat gttcttatag tgtatgtgtt aacattaata ttcagtttaa acactggtgt
     5161 atttattttt agcaacttga ctcctagaag ccttagacta atttttaaat aaacattcaa
     5221 ccaaaaatta tgaatttctt gagatgtggc cttatatgtg gtgttttctg tgttcatatc
     5281 gtgagatttt ttttttaatt tagattttat ttaaatcaag atttagaatt agtttcattt
     5341 taagtcaaaa cagaaagtgt accatgcgtc taggcttctg ggaggaagtt cttacactct
     5401 tctttcttag cattagaagg aagcaatatg aatttatgat attctcaata tccaggccat
     5461 tgtattatgt ccaggttgct ttagcttggt tttagcccaa tttaggttgg ttttagccca
     5521 atgtttcttt aaagttccag gtagttggca ttcactgaat atatagctac tacggttttc
     5581 atatggggcg tatgaactct tggttacatg taggcagatt ttaaaggctt cctgctacat
     5641 taattatgtt gtaacgggag acatctaaaa tattaggtag cattgaattg aagtcacaca
     5701 ggtcttgaat ggtattcgtg gatagtaaat actacgagca gtttccatat caaagtaccc
     5761 taaaactcca ccatgggagt aaatcacact cacttcatga ttggatatac ccttcatttt
     5821 agtaaaagta cttcatttca aaagtttaca ctttactgtg taacacttct cagcatttct
     5881 gtgtgcaaat tattttaaaa ttcagtgata attcatggtt tttttttttc atttttttac
     5941 tttggaaatt gtagtactca ggtggtattt aatgagaaat gatcatttga ggtgaatcat
     6001 aatgcatttt gaggactgca actataacat ttatgacttt agccttaaga aaaggtctat
     6061 tattccttcc ttgcatccca tggtatatta gcaaatagtt tacagcccag cacagcctta
     6121 caaagttgtt ttacaaattt ttatggaaaa cccttaacaa ttaaaaaaat tgtatcatat
     6181 tacagtacct atgagttatg atccccctct gtaaataagt tgtctaatac cagaaggcca
     6241 aagaaagtct tgatttagct attgaatgtg gtgacttcat aagatttctg tgcaaaaggt
     6301 aaggtgatat tccattcaat aggcattctt ttgatgtcca tgaaaactag acttccatat
     6361 tagcttcttt caaaaggctc attcccattt tattaaaatg tttgtacttg caaatttgtg
     6421 tttaatgttt actttgtctt ttctttcttt agcatttagg tgactgttca gcagttttct
     6481 atatggccat tgttggcctt aaactgcgct agtaacaagc atggtattta tcttgtatgg
     6541 aaaataaaaa agttttcgta aga
//
