LOCUS       XM_039087451            1934 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cleavage and polyadenylation specific
            factor 4-like (Cpsf4l), transcript variant X2, mRNA.
ACCESSION   XM_039087451
VERSION     XM_039087451.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1934
                     /gene="Cpsf4l"
                     /note="cleavage and polyadenylation specific factor
                     4-like; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 1 Protein, and 92% coverage
                     of the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:287799"
                     /db_xref="RGD:1306397"
     CDS             584..1264
                     /gene="Cpsf4l"
                     /codon_start=1
                     /product="putative cleavage and polyadenylation
                     specificity factor subunit 4-like protein isoform X2"
                     /protein_id="XP_038943379.1"
                     /db_xref="GeneID:287799"
                     /db_xref="RGD:1306397"
                     /translation="MEEVIAGLQGFTFTFEQDVELQRGTGLLPFQGMDKSSSAVCNFF
                     AKGLCVKGMLCPLRHEQGEKMVVCKHWLRGLCRKSDCCNFLHQYDVSRMPVCYFHSKF
                     GNCNNKECPFLHLKPVPKLQDCPWYDQGFCKEVGPLCKYRHVHQVLCPNYFIGFCPKG
                     PKCQFGHPKMSPILHRSNMKPINQLWDSTTSTGNTLVPHSQAKATVHHQKRWSLPPAC
                     SSRAHLAP"
ORIGIN      
        1 tgcaatagtt tccgagtctt ctggcctgca ttccttttgc accccccccc cccattccat
       61 tcccttgtca ttcagtctga ggctcagtgg gccttgtggg agggagagtg actgggacct
      121 aataggaaac tttcctctgt cccacgccct ctgataaccc ccaccccacc ccaccccacc
      181 catgggcatt gctgtacata gtaggctagc gtctgtgtgc ggctgtgtcc ccacttatac
      241 aatgggaaaa cactgatttg gcaatgactg tgttttgtga tacgcagaga taagcaggtg
      301 tgagtctttg ccaatccctc tccagctgag gatcctgagg ggttgtgtga acagtgtggg
      361 ggtgtggggc cctggaatgc ctgcacctgc atgggtggga gggatgaggc agtttcaggg
      421 cctctggggt acagccagtg agaagaaaga ggtgacctga gagagaggga ccagcatcag
      481 atggggcctg accccttaag agctgatggg ttatatagga gccacctgca gggagggcct
      541 ctagcagctt ggcgctttcc gctttccggg tgggagaccg gagatggaag aggtcattgc
      601 cgggctgcaa gggttcacgt tcacctttga gcaggatgtg gagctgcaga ggggcactgg
      661 gctcctgcct ttccagggca tggacaagtc cagttcggct gtgtgcaact tcttcgctaa
      721 agggctctgt gtgaaaggga tgctgtgccc gcttcggcac gagcagggcg agaagatggt
      781 ggtgtgcaaa cactggcttc gaggcctctg ccggaagagt gactgctgca acttcctgca
      841 ccagtatgac gtcagcagga tgccggtgtg ctacttccac tcaaagttcg gtaattgcaa
      901 caacaaggaa tgccccttcc tccacttgaa gccagttcct aagctccagg actgcccttg
      961 gtatgaccaa gggttctgca aggaagtagg tcccctgtgt aaataccgcc atgtgcatca
     1021 agtcctgtgt cccaactact tcattggctt ctgccccaag ggacctaagt gccaatttgg
     1081 gcaccctaag atgagtccta tactccatcg cagtaacatg aagcctatca accagctatg
     1141 ggattcaaca acttccactg gcaacactct ggtgccccat tctcaggcaa aggccacagt
     1201 ccaccatcag aagaggtgga gcctgcctcc ggcctgcagc tcaagggccc accttgcacc
     1261 ttaggccacc acgccagcga agcaagctgt actagttgga gtcatcaaaa cctagcctgt
     1321 agtgagggag ctggaagttc tcctagcgaa gggctccagg gcctccccag agtgttctgt
     1381 accctgtggt tcagtgagcc ccatcacccg agtgagatac aggatgcaga aagaccttgt
     1441 ttccatttat cctgcgcgtg aacgagatgc caacagcagg accagaggcc agctgactgt
     1501 ggaagggagg agctattcag cagaacaaag tgcacttgaa gccatgaact ctacaaagtc
     1561 agtcagtcag agtcccatgc tccgctccca cgttcctgca gaccactccg ggtcaacggc
     1621 cgcgatccaa tcaaacagtt gctttgagtt tggcagctct ttgcctgaac agcttattta
     1681 tccttgagaa tatactgtgt cttctgtgta gccgcattaa ttccgttttt ttttttttat
     1741 gctgtgagag accatccaac tgggggcggg cggaggaggg gtcgttgtgg ctcgtgcttt
     1801 gagagaaaac tatctcacat gacagagaaa accatggtgg ccgtgtgaac ctgctggcca
     1861 tactgaatcc agtcgaggaa gcacagggaa agaaacagct tccttcttgg tttttctctc
     1921 tttttttctt ttta
//
