LOCUS       XM_039079807            1707 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus carboxypeptidase Q (Cpq), transcript
            variant X2, mRNA.
ACCESSION   XM_039079807
VERSION     XM_039079807.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1707
                     /gene="Cpq"
                     /gene_synonym="LAL; lal-1; Pgcp"
                     /note="carboxypeptidase Q; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 27 ESTs, 13 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:58952"
                     /db_xref="RGD:628610"
     CDS             44..1462
                     /gene="Cpq"
                     /gene_synonym="LAL; lal-1; Pgcp"
                     /codon_start=1
                     /product="carboxypeptidase Q isoform X1"
                     /protein_id="XP_038935735.1"
                     /db_xref="GeneID:58952"
                     /db_xref="RGD:628610"
                     /translation="MRFLFFLFVAVVHLFSLGSGKAIYKSGVSQRTFQEIKEEIANYE
                     DVAKAIINLAVYGKYQNRSYERLGLLVDTVGPRLSGSKNLEKAIQIMYQNLQQDGLEN
                     VHLEQVRIPHWERGEESAVMVVPRIHKLAILGLGGSIGTPPEGITAEVLVVASFVELQ
                     RRASEARGKIVVYNQPYTDYGKTVQYRERGAVEAAKVGAVASLIRSVASFSIYSPHTG
                     HQGYQDGVPKIPTACITIEDAEMMSRMASRGDKIVIHLKMGAKTYPDTDSFNTVAEIT
                     GSKYPEEVVLVSGHLDSWDVGQGALDDGGGAFISWEALSLVKDLGLRPKRTLRLVLWT
                     AEEQGGVGASQYYELHKANISKYSLVMEADSGTFLPTGLQFTGSDKARAIMKEVMSLL
                     QPLNITKVFNDAEGTDINFWIQAGVPGASLRDDLYKYFFFHHSHGDTMTAMDPKQMNV
                     AAAVWAVVAYVVADMEEMLPRS"
ORIGIN      
        1 ggcacactcc aaggtggatg tggaagaaaa gaaactaggg acaatgaggt tccttttctt
       61 cctgttcgtt gctgttgttc accttttctc cttgggctct ggaaaagcta tatacaagag
      121 tggtgtttct cagcgaacat ttcaagaaat aaaagaagaa atagccaact atgaagatgt
      181 tgctaaagca attatcaacc ttgctgttta tggaaaatac cagaaccggt cgtatgagcg
      241 tttgggactt ctagttgata ctgttggacc cagactgagt ggctctaaga acctagagaa
      301 agctatccaa atcatgtacc aaaacctgca acaagatggg ctggaaaacg tccacctgga
      361 gcaggtcaga atacctcact gggagagggg cgaagaatct gcagtgatgg tggtgcctcg
      421 aattcacaag ttggctattt taggccttgg cggcagcatt gggactcctc ctgaaggtat
      481 cacagcagaa gtactcgtgg tggcctcttt tgttgaactt caaagaaggg catcagaggc
      541 aagagggaag attgttgttt ataaccagcc ttacactgac tatgggaaaa ctgtgcagta
      601 ccgggagcgc ggagctgtgg aagctgccaa ggtgggggcc gtggcatccc tcatccgatc
      661 agtagcttct ttttccatct acagtcctca cacaggtcat caaggatatc aagatggtgt
      721 gcccaagatt ccaacagcct gtatcacaat agaagatgca gaaatgatgt ctcgaatggc
      781 ttctcgtggg gacaaaattg tcattcatct gaaaatggga gcaaagacct atccagatac
      841 agattccttc aacactgttg cagagatcac tgggagcaag tatccagagg aagttgtcct
      901 ggtcagtgga catctggaca gctgggacgt cgggcagggt gcactggatg atggcggtgg
      961 agccttcata tcatgggaag cactctcact tgttaaagat cttgggctgc gtccaaagag
     1021 gactctgcgc ttggtgctct ggaccgcaga agaacaagga ggggttggtg cctcccagta
     1081 ttatgagcta cataaggcaa atatttccaa gtacagtttg gtgatggagg ctgactcagg
     1141 aaccttctta cccactgggc tgcagttcac cggcagtgac aaggccaggg ctatcatgaa
     1201 ggaagtcatg agtctcctgc aacccctcaa tatcaccaag gtctttaatg atgcagaagg
     1261 aactgacatt aacttctgga tccaagctgg agtgcctgga gccagtctgc gagatgactt
     1321 gtacaagtat ttctttttcc atcattccca tggagacacc atgactgcca tggatccaaa
     1381 gcagatgaat gttgctgctg ctgtttgggc tgttgtcgct tacgttgtgg cagacatgga
     1441 ggaaatgctg cccaggtcct aaggaaaaca agaaggaaga accttgttct ctgcagctgg
     1501 gaatccccat tcgggatttt cacagcagcc atcttcacag caccttgtta tacactcaat
     1561 ccccgtggca cagtttcttt ataccttctg ttaaccatct ttccttgata cgcttttacc
     1621 tgttctagaa taagtaatca tcactactgt accaccttga aaatactgtt tccagtttaa
     1681 aaataaacaa taaatatatg aaaagtt
//
