LOCUS       XM_039084310            1186 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus carboxypeptidase O (Cpo), mRNA.
ACCESSION   XM_039084310
VERSION     XM_039084310.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086027) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 24% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 JAXUCZ010000009.1  72813802-72813808
            8-93                JAXUCZ010000009.1  72814171-72814256
            94-207              JAXUCZ010000009.1  72817278-72817391
            208-435             JAXUCZ010000009.1  72820761-72820988
            436-495             JAXUCZ010000009.1  72821823-72821882
            496-496             "N"                1-1
            497-577             JAXUCZ010000009.1  72821883-72821963
            578-678             JAXUCZ010000009.1  72824952-72825052
            679-783             JAXUCZ010000009.1  72825054-72825158
            784-868             JAXUCZ010000009.1  72830799-72830883
            869-870             JAXUCZ010000009.1  72831102-72831103
            871-918             JAXUCZ010000009.1  72831739-72831786
            919-1186            JAXUCZ010000009.1  72831789-72832056
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1186
                     /gene="Cpo"
                     /note="carboxypeptidase O; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; deleted 3 bases in 2 codons; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein"
                     /db_xref="GeneID:689717"
                     /db_xref="RGD:1588771"
     CDS             1..978
                     /gene="Cpo"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 3 bases in 2 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:517..519,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: carboxypeptidase O"
                     /protein_id="XP_038940238.1"
                     /db_xref="GeneID:689717"
                     /db_xref="RGD:1588771"
                     /translation="MADPQHRQEFVSPQRSLETYSYDRYHPWGRGIYQWMRQVSEKYA
                     EVLTQHFLRMTYETWPMHYLKESAEISLTSSNSKKTIWIDCGIHASRWIAPAFCQWFL
                     REGSVFTCLLMLNHAIEYLSTLGSSETYFFPVNWNGIQLAPLQILQNDKDSARIGRLL
                     KELDFXVLNADGXIYTWTTAWTLPVGQGYLCLHIGTPINCQDVTFCGIEPMLEPELTP
                     SQALQKARGKKDILCFLIMGSYGQLILTPYGHTKNKPHNYEELIQVGQKAARALKAKH
                     GTNYRVGSGADILYMLSGSSKDWNGGIGIPLFSYTFELVDNGTHGFALI"
ORIGIN      
        1 atggcagatc cccagcacag acaagagttt gtcagtccac agaggagcct tgagacctat
       61 tcctatgaca gataccaccc atgggggagg ggaatctatc agtggatgcg ccaggtcagc
      121 gagaagtatg cagaagtgct gacacagcat ttcctgagaa tgacctatga gacctggccc
      181 atgcactacc tgaaggagag tgcagagatc agcttaactt ccagcaattc caagaagact
      241 atttggatag actgtggaat tcatgccagc agatggattg cccccgcttt ctgccagtgg
      301 tttctgagag agggaagtgt ctttacttgc ctcctaatgc taaatcatgc cattgagtac
      361 ctgtccactc tgggctcttc agaaacatac ttctttcccg ttaactggaa cggtattcaa
      421 ttagccccac ttcaaattct acagaatgat aaagacagtg caaggatcgg cagactcctt
      481 aaggaactag acttcnatgt gctaaatgcc gatggttaga tctacacttg gacaacagca
      541 tggacactgc ctgtggggca gggctattta tgtttgcata tcggcacacc cataaactgc
      601 caagatgtaa cattctgtgg gatagaacca atgttggaac cagaactcac tccttctcaa
      661 gccttacaga aagcaagggg aaaaaaagac atcctgtgct tcctgatcat gggctcttat
      721 gggcaactca ttctcacacc atatggccac accaaaaata aaccacataa ctacgaagaa
      781 ctaattcaag ttggacagaa ggcggcaaga gccctgaaag caaagcatgg aaccaattat
      841 agagttggat cgggtgcaga tattttatat atgctgtcag gatcctcaaa agactggaat
      901 ggaggcattg ggatccccct cttctcatac acatttgagc tggtggacaa tggtacccat
      961 gggtttgctc tgatctagtg catatatgag gagacaggga aaccattttc ttaccccttg
     1021 atgatgtgta tgagaattac tggcccaaag ggggcactca ctatctcggc agcagccatg
     1081 ctttacttct tcacatgtct cctttaagta tgtcctactc tggcctgctt agccccagtg
     1141 atggggatgt ggttggggtg aaggtgtgtg ttgcacagca accaaa
//
