LOCUS       NM_001024982            1983 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus copine family member 9 (Cpne9), mRNA.
ACCESSION   NM_001024982 XM_216232
VERSION     NM_001024982.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Yoo,J.C., Lim,Ty., Park,J.S., Hah,Y.S., Park,N., Hong,S.G.,
            Park,J.Y. and Yoon,T.J.
  TITLE     SYT14L, especially its C2 domain, is involved in regulating
            melanocyte differentiation
  JOURNAL   J Dermatol Sci 72 (3), 246-251 (2013)
   PUBMED   23999003
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Pieragostino,D., Agnifili,L., Fasanella,V., D'Aguanno,S.,
            Mastropasqua,R., Di Ilio,C., Sacchetta,P., Urbani,A. and Del
            Boccio,P.
  TITLE     Shotgun proteomics reveals specific modulated protein patterns in
            tears of patients with primary open angle glaucoma naive to therapy
  JOURNAL   Mol Biosyst 9 (6), 1108-1116 (2013)
   PUBMED   23580065
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091347.1.
            
            On Jun 25, 2005 this sequence version replaced XM_216232.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091347.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1983
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /note="copine family member 9"
                     /db_xref="GeneID:297516"
                     /db_xref="RGD:1309212"
     exon            1..155
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..1749
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /note="copine IX; copine family member IX"
                     /codon_start=1
                     /product="copine-9"
                     /protein_id="NP_001020153.1"
                     /db_xref="GeneID:297516"
                     /db_xref="RGD:1309212"
                     /translation="MSLGGASERSVPATKIEITVSCRNLLDLDTFSKSDPMVVLHTQS
                     RASQEWREFGRTEVIDNTLNPDFVRKFVLDYFFEEKQNLRFDVYNVDSKANISKPKDF
                     LGQAFLALGEVIGGQGSRVERPLTGVPGKKCGTILLTAEELSNCRDIATMQLCANKLD
                     KKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRALCNGDYDRT
                     VKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKKYTNSGTVT
                     LLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPYQLSAYAMAL
                     KAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQ
                     SLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQTKEAIVSAS
                     SLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVL
                     SMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPNPTSAPEQP"
     exon            156..196
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            197..243
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            244..347
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            348..384
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            385..387
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            388..464
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            465..528
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            529..632
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            633..737
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            738..779
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            780..855
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            856..909
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            910..971
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1018
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1200
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1328
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            1329..1431
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1489
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            1490..1563
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
     exon            1564..1959
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgctgcctc cgcacatggg ccactgcccc tagcttcggc acccggggtc tcgcagcccc
       61 tacacggctt tggccattgg accagccatg tctctcggcg gagcttcaga gcgtagcgtc
      121 ccggccacca agattgaaat tactgtgtcg tgccggaatc tgctagacct ggatacattc
      181 tccaagtcgg accccatggt ggtgcttcac acgcagagcc gggccagcca ggagtggcgg
      241 gagttcggac gaaccgaggt gattgacaac acactgaacc cagacttcgt gcgcaaattc
      301 gttctcgact atttctttga ggaaaagcaa aatctccgct tcgatgtgta caacgtcgac
      361 tctaaagcca atatctccaa accgaaggat ttcctgggac aagcattcct ggccctggga
      421 gaggtgattg gaggccaggg cagccgtgtg gagcgacctc ttacgggtgt gccaggcaag
      481 aagtgtggaa ccatactgct gactgccgag gagctcagca actgccggga cattgccacc
      541 atgcagctgt gtgcaaacaa gctggacaaa aaggacttct ttgggaagtc agaccctttc
      601 cttgtgttct acaggagcaa tgaagacggc acgttcacca tctgccacaa gacagaggtt
      661 gtaaaaaaca cactgaaccc agtatggcag cccttcagca tccctgtgcg ggcgctgtgc
      721 aatggagact atgacagaac agtgaagatc gacgtatatg actgggaccg agatggaagc
      781 catgacttca tcggtgagtt cacaaccagc taccgggagc tgagcaaggc ccagaatcag
      841 ttcacagtgt atgaggtact taaccctcgg aagaaatgca agaagaagaa atataccaac
      901 tcggggaccg tgacgctcct ttccttctct gtggactcag aattcacttt tgtggattac
      961 atcaagggag ggacgcagct gaacttcacg gtagctattg acttcacggc ttccaacggg
     1021 aaccccctgc agcctacctc gctgcactac atgagtccct accagctcag tgcctatgcc
     1081 atggccctca aggcagtggg agagatcatc caggactatg acagtgacaa gctcttccca
     1141 gcctatggtt ttggggccaa gctgccccca gaggggcgga tctcccacca gttccccctg
     1201 aacaataatg atgaagaccc caactgtgca ggcattgagg gtgtgctgga gagttacttc
     1261 caaagtctgc gcacggtgca gctctatggg cccacttact ttgcgcctgt catcaaccag
     1321 gtggccaggg ctgcagccaa aatctcggat ggttcccagt actacgttct gctcattatc
     1381 actgatggcg tcatctctga catgacacag accaaagagg ccatcgtcag tgcgtcctcg
     1441 ctgcccatgt ctatcattat tgtgggtgtt ggacctgcca tgtttgaggc aatggaagaa
     1501 ctggatggtg atgatgtgcg tgtgtcctcc cggggacgct atgcagagcg ggacatcgtt
     1561 cagtttgtcc cattccgaga ttatgttgac cgatcaggga accaggtgct gagcatggca
     1621 cgactggcca aggatgtgct agcagagatt ccggagcagc tgctgtccta catgcgcacc
     1681 agggacatcc agcctcgacc tcctccccct gctaacccca acccaacctc agccccagaa
     1741 cagccctgag gattctgcat atccaatgct tagttagcag tctgcttact tgtttaccca
     1801 ctgctggaag ctaaaggccc ctggagttct gaacctcacc aggagggcca gctaggttga
     1861 tcagtgctgg ctgacaagct ttttgtcccc aacttccgaa aaggcctggc atgatcacca
     1921 cctaccttcc tatgccaata ataaagctga tcttctcaaa aaaaaaaaaa aaaaaaaaaa
     1981 aaa
//
