LOCUS       NM_001108750            3380 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus copine 8 (Cpne8), mRNA.
ACCESSION   NM_001108750 XM_001056316 XM_343318
VERSION     NM_001108750.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M and
            Stoorvogel W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474027.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343318.3, XM_001056316.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168840.1, AM747284.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q35"
     gene            1..3380
                     /gene="Cpne8"
                     /note="copine 8"
                     /db_xref="GeneID:362988"
                     /db_xref="RGD:1307939"
     exon            1..266
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     CDS             130..1863
                     /gene="Cpne8"
                     /note="copine VIII; copine 8 protein"
                     /codon_start=1
                     /product="copine-8"
                     /protein_id="NP_001102220.1"
                     /db_xref="GeneID:362988"
                     /db_xref="RGD:1307939"
                     /translation="MWARDKCSAPPLEMDSRYTSATGIGDLNQLSAAIPATRVEVSVS
                     CRNLLDRDTFSKSDPICVLYTQAVGNKEWREFGRTEVIDNTLNPDFVRKFILDYFFEE
                     RENLRFDLYDVDSKSPNLSKHDFLGQVFCTLGEIVGSQGSRLEKPIVGIPGRKCGTII
                     LTAEELNCCRDAVLMQFCANKLDKKDFFGKSDPFLVFYRSNEDGSFTICHKTEVVKNT
                     LNPVWQAFKISVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTSYRELSRGQSQFN
                     VYEVVNPKKKGKKKKYTNSGTVTLLSFLVETEVSFLDYIKGGTQINFTVAIDFTASNG
                     NPAQPTSLHYMNPYQLNAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEF
                     ALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNFAPVINHVARYASSVKDGSQYFV
                     LLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFDAMVELDGDDVRVSSRGKY
                     AERDIVQFVPFRDYIDRSGNHILSMARLAKDVLAEIPEQFLSYMRARGIKPSPAPPPY
                     TPPTHVLQTQI"
     exon            267..307
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            308..354
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            355..458
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            459..498
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            499..575
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            576..639
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            640..743
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            744..848
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            849..890
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            891..966
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1020
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1082
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1129
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1311
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1312..1439
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1440..1542
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1600
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1601..1674
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
     exon            1675..3380
                     /gene="Cpne8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcgcgacgag gtccgcctct tccctcccct tcccgcgccg cctccgcctc cttcctctgc
       61 ctccaccctc accccttccc gtcggtgcgg agctcggctc cgagcagcgc tcagcccgcc
      121 gcagcttgga tgtgggctcg ggacaagtgc tctgcgcctc cgctcgagat ggacagccgc
      181 tacaccagcg ccacgggcat cggggacttg aaccagctga gtgcggccat ccctgccaca
      241 cgcgtggagg tgtcggtgtc ctgcagaaat cttcttgata gagatacatt ttctaagtct
      301 gatccaattt gtgtcttata tacacaagca gttggaaaca aagaatggag agagtttgga
      361 agaactgaag tgattgataa tactttgaat cctgattttg taagaaagtt tattctggat
      421 tatttctttg aagaaagaga gaatcttcgt tttgacttgt atgatgttga ttcaaagagt
      481 cccaacctgt ccaaacatga ctttctggga caagtgtttt gtacattggg ggagattgtt
      541 ggttcacagg gaagtcgtct ggaaaagcca atagtaggaa ttccaggcag gaaatgtgga
      601 acaatcatac taaccgcgga ggagctcaac tgctgcaggg atgccgtcct gatgcagttc
      661 tgtgcaaaca aattggataa gaaggatttc tttgggaagt cagatccttt ccttgtattt
      721 tatcgaagca atgaggacgg aagctttaca atttgtcaca agacagaagt ggtcaaaaac
      781 actctcaacc ctgtgtggca agccttcaag atctcagtga gagccttgtg caatggggat
      841 tatgacagaa caatcaaagt ggaggtctat gactgggacc gagacggaag tcatgatttc
      901 attggggaat ttacaacaag ctatcgggaa ctctcaagag gacagtcaca attcaatgtc
      961 tatgaggtgg tgaatcccaa gaagaaagga aaaaagaaaa agtacactaa ttcaggaaca
     1021 gtaaccttat tgtccttctt ggtagaaaca gaagtctcct tcctggacta tattaaagga
     1081 gggacacaga tcaacttcac ggtggccatt gattttacgg catcaaatgg aaaccctgcc
     1141 cagcccactt ctctccacta catgaaccct tatcaactga atgcctatgg aatggccctc
     1201 aaggctgtag gagaaatcgt ccaagattat gacagcgaca agatgttccc agcccttggt
     1261 ttcggtgcaa agctccctcc agatggaagg atatctcacg agtttgcctt gaatggcaac
     1321 cctcagaatc cttactgtga cggcattgaa ggagtcatgg aagcttacta tagaagtctg
     1381 aaatctgtgc agttgtacgg gccaaccaac tttgctcccg taataaacca cgtagcaaga
     1441 tatgcatcct ctgtaaaaga tggctcccag tactttgtgc tcctcattgt gacggacggc
     1501 gtcatctcag atatggctca gactaaagaa tccatagtaa acgcctccaa gctccccatg
     1561 tcaataatta tagtaggtgt tggccctgca gaatttgatg caatggttga actggatggg
     1621 gatgatgtga gagtttcctc cagagggaaa tatgccgaaa gagacattgt acagtttgtg
     1681 ccattcaggg attatattga ccgaagtgga aaccacatcc tgagcatggc tagactggcc
     1741 aaagatgtct tagctgagat ccctgagcag ttcctctcct acatgagagc cagaggaatt
     1801 aagccatcgc ccgcacctcc gccctacacc cctcccacac acgtgctgca gacgcagata
     1861 tgaccgcatc ctgatgccga cgtccctcac acgccagtca gaactgcgaa gcctgttctt
     1921 tgatcctggt gctctgctat gaaccaggga aggggacttt ctcagcgtgg tttcagcagt
     1981 actggggaaa atgtgctttc ttggatccaa aattaattct cttcctaaac caaaactgta
     2041 aatatggttg ttgcatgagc aaccggggaa ataatggttt aaatgcttga agcgaagtag
     2101 agatgtcttc tctaattttt gaatatattt tttttgtttt gttctcgacg gaatagtcca
     2161 tttccaatgt attattggga aaaagcacaa gctacgtttt taacacaaat gttgtccttg
     2221 actgctacat atataggccg gcagtctctg tgtcgatgtt tacacgttac tactttttaa
     2281 atttcaatac ttttataact gttcttaaga ctaagtttta aatattgaat cctttgtctt
     2341 ctaaattgca atagctataa ccacaggagc aatatctctt tgaatgactg tctggacact
     2401 tgcagtatga gtgagggaag agaaggaggt agatcactaa ggcaatctcc ttcacgatta
     2461 atacccgtca tcagttttgg ccaatagcgg gagtttctat ttataaacag atgaggccct
     2521 gtaatatgca tcttttcatg gcctttgggt ttaaatttag actgcggtca atttgtcttt
     2581 cgcaatgcaa actagaagca acaaacaggc aaacattgtg aactgttaat gcacagaata
     2641 cacgttgtat caaaaccacc atccttacga tgctatcatt taatgagtaa aaccaagact
     2701 gtaactccaa accatgtagc aggtattttg aaccttgtat tacgttgtat cctgtctaga
     2761 tattttaatt caaagggata ctgcctctct cgctcgggat ttgcgttctc accctcccac
     2821 ctcgactcac gggtttcaca ggctgaagtc tcttgtgaat cctcagttcc acgtacacga
     2881 ccccgtgact cagcgcacaa cacatttgtg aaataaactc acccctgtgg cccgacctgc
     2941 ctgtgtgtga aatagcccac ccctccgccc tgatctgcct gctcacaatc aattctaaat
     3001 agttttcaat gtacagtttt tatacaaact acagttttgt gaagtcatgt ctacatttct
     3061 ttagaacaaa tggccttaaa ttctcacaga attcctggaa atgattgtga attgccttca
     3121 aaatacagaa atgtgtattc gttgttcttt tcgtgtcaac ggtgtgactg ctttctaacc
     3181 tctctgcctc cccctctttg ctacttggat tggtcctatt gtacgtgctc ttgccacaac
     3241 ttgaccttcg gtgactttta taagcatgaa actgttttac tggaaaaaaa tgcatactcc
     3301 tcatagctaa caggatcaca gttccgtaac tgtgatatga actgtccatt tttaagtacc
     3361 tattaaaaat ctttaaaagg
//
