LOCUS       NM_001399095            2350 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus copine 7 (Cpne7), mRNA.
ACCESSION   NM_001399095 XM_006255774
VERSION     NM_001399095.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Perestenko,P., Watanabe,M., Beusnard-Bee,T., Guna,P. and
            McIlhinney,J.
  TITLE     The second C2-domain of copine-2, copine-6 and copine-7 is
            responsible for their calcium-dependent membrane association
  JOURNAL   FEBS J 282 (19), 3722-3736 (2015)
   PUBMED   26175110
  REMARK    GeneRIF: The second C2-domain of copine-7 is responsible for
            calcium-dependent membrane association.
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Perestenko,P.V., Pooler,A.M., Noorbakhshnia,M., Gray,A., Bauccio,C.
            and Jeffrey McIlhinney,R.A.
  TITLE     Copines-1, -2, -3, -6 and -7 show different calcium-dependent
            intracellular membrane translocation and targeting
  JOURNAL   FEBS J 277 (24), 5174-5189 (2010)
   PUBMED   21087455
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006255774.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AM747283.1, SRR26360194.1922060.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               JAXUCZ010000019.1  68074629-68074840
            213-395             JAXUCZ010000019.1  68076754-68076936
            396-470             JAXUCZ010000019.1  68081474-68081548
            471-545             JAXUCZ010000019.1  68081715-68081789
            546-629             JAXUCZ010000019.1  68082630-68082713
            630-719             JAXUCZ010000019.1  68083304-68083393
            720-818             JAXUCZ010000019.1  68083644-68083742
            819-905             JAXUCZ010000019.1  68084362-68084448
            906-965             JAXUCZ010000019.1  68084768-68084827
            966-1099            JAXUCZ010000019.1  68085636-68085769
            1100-1154           JAXUCZ010000019.1  68086473-68086527
            1155-1206           JAXUCZ010000019.1  68086970-68087021
            1207-1340           JAXUCZ010000019.1  68087089-68087222
            1341-1577           JAXUCZ010000019.1  68089553-68089789
            1578-2350           JAXUCZ010000019.1  68090425-68091197
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..2350
                     /gene="Cpne7"
                     /note="copine 7"
                     /db_xref="GeneID:361433"
                     /db_xref="RGD:1307466"
     exon            1..212
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1715
                     /gene="Cpne7"
                     /note="copine VII"
                     /codon_start=1
                     /product="copine-7"
                     /protein_id="NP_001386024.1"
                     /db_xref="GeneID:361433"
                     /db_xref="RGD:1307466"
                     /translation="MSGDSERTVAPGVVPAPCASKVELRLSCRHLLDRDPLTKSDPSV
                     VLLQQAQGQWLQVDRTEVVKSSLHPVFSKVFTMDYYFEEVQKLRFEVYDTHGPSGLSC
                     QDDDFLGGMECTLGQIVAQKKMTRPLLLRFGRNAGKSTITVIAEDISGNNGYVELSFQ
                     ARKLDDKDLFSKSDPFLELYRVNDDGSEQLVYRTEVVKNNLNPVWEPFKVSLNSLCSC
                     EETRPLKCLVWDYDSRGKHDFIGDFTTTFAEMQKAFEEEQAQWDCVNAKYKQKKRNYK
                     NSGVVILADLKLHRVHSFLDYIMGGCQIHCTVAIDFTASNGDPRNSCSLHHINPYQPN
                     EYLRALVAVGEVCQDYDSDKRFSALGFGARIPPKYEVSHDFAINFNPEDDECEGIQGV
                     VEAYQNCLPRVQLYGPTNVAPIISKVARMAAAEERTGEASQYYILLILTDGVVTDMSD
                     TREAIVRASHLPMSVIIVGVGNADFTDMQILDGDDGILRSPRGEPALRDIVQFVPFRE
                     LKNASPAALAKCVLAEVPKQVVEYYSHKDLPPRSLGGQTGEAGPSSAP"
     exon            213..395
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            396..470
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            471..545
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            546..629
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            630..719
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            720..818
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            819..905
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            906..965
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1099
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1154
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            1155..1206
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1340
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1577
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..2350
                     /gene="Cpne7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accatttctc cggcgcccac cggttcgagt gcggagcctg aagcatgagc ggcgactcgg
       61 agcgcacggt ggccccgggg gtggtgcctg caccctgcgc ctcgaaggtg gagctgcggc
      121 tgagctgccg gcacctgctg gatcgggatc cgctgaccaa gtcggacccc agcgtggtgc
      181 tgctgcagca ggcacagggc cagtggctac aggtggacag aacggaggtg gtgaagagca
      241 gcctgcatcc tgtgttctcc aaggtcttca ctatggacta ttacttcgag gaggtgcaga
      301 agctacgatt tgaggtgtac gacacccacg ggcctagtgg gctgagttgc caggatgatg
      361 acttcctagg gggcatggag tgtaccctgg gtcaaattgt ggcccagaag aaaatgacac
      421 gtccactgct gctgagattc ggcaggaatg ctggcaaatc caccatcacg gtgatagcag
      481 aggacatctc tggtaacaac ggctacgtgg agctctcctt ccaagcccgg aaactggatg
      541 acaaggacct cttcagcaag tcggacccct tcctagagct gtatcgggtc aacgacgacg
      601 ggagtgaaca gctggtgtac aggacagagg tcgtgaagaa taatcttaac ccagtgtggg
      661 aacccttcaa ggtgtccctg aattcgctct gcagctgcga ggagacacgg cctctgaagt
      721 gcctggtctg ggactatgac tcccgaggaa agcatgactt cattggcgac ttcaccacca
      781 ccttcgcaga gatgcagaag gcctttgagg aggagcaggc ccagtgggac tgtgtgaatg
      841 ccaagtacaa acagaagaag cgcaattaca agaactctgg ggtggtgatc ctggcggacc
      901 tgaagctcca cagggtccac tccttcctgg attacatcat gggtggctgc cagatccact
      961 gcacggtagc catcgacttc acagcctcca atggtgaccc aaggaacagc tgctccctcc
     1021 accacatcaa cccttaccag cccaacgagt acctgagggc gctggtggcc gtgggcgagg
     1081 tctgccagga ttatgacagt gacaagcgat tttctgcttt gggatttgga gcccggatac
     1141 ctccaaagta tgaggtgtcc catgactttg ccatcaactt caaccccgag gacgatgagt
     1201 gtgaagggat ccagggtgtg gtagaggcct accagaactg cctgccgagg gtccagctct
     1261 acggccccac caatgtggcc cccatcatct ctaaggtggc acgcatggca gcagctgagg
     1321 agcgcacagg ggaggcttct caatattaca tactgctgat cctcacggac ggtgtggtga
     1381 cggatatgtc ggacactcga gaggccatcg tgcgcgcctc ccacctgccc atgtctgtca
     1441 tcattgttgg ggtgggcaac gccgacttca cggatatgca aatcttagat ggggatgatg
     1501 gaatcctacg ctcaccacgg ggcgagcctg cactccgaga catcgttcag tttgtgccct
     1561 tccgtgagct caagaatgcg tcccctgcgg cactggccaa gtgtgtgttg gccgaggtgc
     1621 caaagcaggt ggttgagtac tacagccaca aggacctgcc tcctcgaagc cttggtggcc
     1681 agactggaga ggctggtccc agctcagcgc catgaggatg tcaggggagg gggctttgaa
     1741 gagtatgtcc caatctacag catctcctgt gcccccagag acccctcact cagaagctca
     1801 tcactcagcc caggccccag ccttgctccc gtgttcggct ggcctgggcc agtggcccgt
     1861 tttcccaaca taaagagatc taggccttgt ggagtgacag aaatcattag ctctcccatg
     1921 tctgggcctc cctgtatgca acaggcatag agcagggtat tctgaaagag ctggagctac
     1981 agaaatgctc ttcccctctt gcttgagctc acctctctgt cacgtcgggt gtcaatcaca
     2041 ctgcctggca ccacttcaga agagccccca agcccaactc ggtccagaga gatgggtggg
     2101 accacacctg tcataatccc ggcagctcag ctgtggaagg ggtggttgat ttggagagtt
     2161 ttgtcatttg atcttgtgga gagaggcagt accccaaccc tcgaggatac ctatttctag
     2221 gcactctgat cccatcggtt tctctgtcct atctggtacc agtccaaccc atgctcatac
     2281 ctgagaccct ggggcctgaa aggtctgtgg gaggcagctt tgggtataat aaagcatccc
     2341 ctcattctca
//
