LOCUS       NM_001107616            4311 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus copine 5 (Cpne5), mRNA.
ACCESSION   NM_001107616 XM_001069585 XM_228044
VERSION     NM_001107616.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4311)
  AUTHORS   Yoo,J.C., Lim,Ty., Park,J.S., Hah,Y.S., Park,N., Hong,S.G.,
            Park,J.Y. and Yoon,T.J.
  TITLE     SYT14L, especially its C2 domain, is involved in regulating
            melanocyte differentiation
  JOURNAL   J Dermatol Sci 72 (3), 246-251 (2013)
   PUBMED   23999003
REFERENCE   2  (bases 1 to 4311)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   3  (bases 1 to 4311)
  AUTHORS   Ding,X., Jin,Y., Wu,Y., Wu,Y., Wu,H., Xiong,L., Song,X., Liu,S.,
            Fan,W. and Fan,M.
  TITLE     Localization and cellular distribution of CPNE5 in embryonic mouse
            brain
  JOURNAL   Brain Res 1224, 20-28 (2008)
   PUBMED   18614158
REFERENCE   4  (bases 1 to 4311)
  AUTHORS   Humphreys,N.E., Xu,D., Hepworth,M.R., Liew,F.Y. and Grencis,R.K.
  TITLE     IL-33, a potent inducer of adaptive immunity to intestinal
            nematodes
  JOURNAL   J Immunol 180 (4), 2443-2449 (2008)
   PUBMED   18250453
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001107616.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AM747282.1, SRR26643298.77936.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-193               JAXUCZ010000020.1  7290404-7290596     c
            194-234             JAXUCZ010000020.1  7281021-7281061     c
            235-281             JAXUCZ010000020.1  7280132-7280178     c
            282-385             JAXUCZ010000020.1  7263591-7263694     c
            386-425             JAXUCZ010000020.1  7262121-7262160     c
            426-502             JAXUCZ010000020.1  7261879-7261955     c
            503-562             JAXUCZ010000020.1  7256940-7256999     c
            563-626             JAXUCZ010000020.1  7254678-7254741     c
            627-730             JAXUCZ010000020.1  7243610-7243713     c
            731-835             JAXUCZ010000020.1  7237964-7238068     c
            836-877             JAXUCZ010000020.1  7229779-7229820     c
            878-953             JAXUCZ010000020.1  7227284-7227359     c
            954-1007            JAXUCZ010000020.1  7223646-7223699     c
            1008-1069           JAXUCZ010000020.1  7221224-7221285     c
            1070-1116           JAXUCZ010000020.1  7216697-7216743     c
            1117-1298           JAXUCZ010000020.1  7214294-7214475     c
            1299-1426           JAXUCZ010000020.1  7213689-7213816     c
            1427-1529           JAXUCZ010000020.1  7213322-7213424     c
            1530-1587           JAXUCZ010000020.1  7212390-7212447     c
            1588-1661           JAXUCZ010000020.1  7211991-7212064     c
            1662-4311           JAXUCZ010000020.1  7208389-7211038     c
FEATURES             Location/Qualifiers
     source          1..4311
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..4311
                     /gene="Cpne5"
                     /note="copine 5"
                     /db_xref="GeneID:309650"
                     /db_xref="RGD:1308021"
     exon            1..193
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1880
                     /gene="Cpne5"
                     /note="copine 5 protein; copine V"
                     /codon_start=1
                     /product="copine-5"
                     /protein_id="NP_001101086.1"
                     /db_xref="GeneID:309650"
                     /db_xref="RGD:1308021"
                     /translation="MDQPEDMASLSEFDSLAGSIPATKVEITVSCRNLLDKDMFSKSD
                     PLCVMYTQGMENKQWREFGRTEVIDNTLNPDFVRKFIVDYFFEEKQNLRFDLYDVDSK
                     SPDLSKHDFLGQAFCTLGEIVGSSGSRLEKPLTIGTFSLNSRTGKPMPAVSNGGVPGK
                     KCGTIILSAEELSNCRDVATMQFCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKT
                     EVMKNTLNPVWQTFSIPVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTSYRELAR
                     GQSQFNIYEVINPKKKMKKKKYVNSGTVTLLSFAVESESTFLDYIKGGTQINFTVAID
                     FTASNGNPSQSTSLHYMSPYQLNAYALALTAVGEIIQHYDSDKMFPALGFGAKLPPDG
                     RVSHEFPLNGNQENPSCCGIDGILEAYHSSLRTVQLYGPTNFAPVVTHVARNAAAVQD
                     GSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGVGQAEFDAMVELDGDDVRI
                     SSRGKLAERDIVQFVPFRDYVDRTGNHVLSMARLARDVLAEIPDQLVSYMKAQGIRPR
                     PPPAAPVQSPPQSPAHSPPGSPVHTHI"
     exon            194..234
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            235..281
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            282..385
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            386..425
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            426..502
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            503..562
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            563..626
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            627..730
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            731..835
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            836..877
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            878..953
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1007
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1069
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1116
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1298
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1426
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1427..1529
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1530..1587
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1588..1661
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
     exon            1662..4311
                     /gene="Cpne5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctggccgcc cagcccaggg ctgcagccgc ttcggaggag gcgtgaatcg cgcaggaata
       61 ttgactaatt tggggtgggg tggggggaac ggtgggcgat ggatcagccc gaggacatgg
      121 cgtcgctcag cgagttcgac tccttggcgg gcagcatccc ggctaccaag gtggagatca
      181 ccgtgtcctg caggaacctc ttggacaaag acatgttttc caagtctgat ccactgtgtg
      241 ttatgtacac tcaagggatg gagaacaagc aatggcgaga gtttggacgc accgaggtca
      301 ttgacaacac gctcaacccg gactttgtgc gcaagttcat cgtggattac ttctttgagg
      361 agaagcagaa cctccgtttt gatctatacg acgttgactc caagagcccg gatttatcta
      421 aacatgactt cctgggccag gccttctgta ccctaggaga gattgtaggg tcctctggga
      481 gccgtctgga gaagcctctc acgataggaa cgttcagcct caactcccgg acaggcaaac
      541 ctatgccagc cgtgtctaac ggtggtgtcc cagggaagaa atgtggcacc atcatcctgt
      601 ctgcagagga actgagcaat tgcagggatg tggccacaat gcaattctgt gccaacaagc
      661 tggacaagaa agatttcttc gggaaatccg accccttctt ggtgttctac aggagcaatg
      721 aagacggaac gttcaccatc tgtcacaaga ccgaggtcat gaagaacacc ctcaacccgg
      781 tgtggcagac cttctccatc cccgtgaggg cactgtgcaa tggagactat gacaggacca
      841 tcaaggtgga ggtgtacgac tgggatcgtg atggcagcca tgatttcatt ggagagttca
      901 ccaccagcta ccgggagctg gcacgcggcc agagtcagtt caacatatac gaggtgataa
      961 atccgaaaaa gaaaatgaag aaaaagaaat acgtgaattc cggcacggtc actttgcttt
     1021 cttttgcggt cgagtcagag agtaccttcc tggattacat caaaggaggg acacagatca
     1081 atttcaccgt ggccatcgac ttcactgcct ctaatgggaa cccctcgcag tccacgtccc
     1141 tccactacat gagcccctac cagctgaacg cctacgcgct ggcgctgact gccgtcgggg
     1201 agatcatcca gcattatgac agcgacaaga tgttccctgc cctgggcttc ggggccaagc
     1261 tgccccccga cggcagggtg tcccatgagt tcccgctgaa tggcaaccag gagaacccct
     1321 cctgctgtgg catcgatggc atcctggagg cctaccacag cagcctgcgc actgtgcagc
     1381 tttacggccc cacaaacttc gcccctgtcg tcacccacgt agccaggaat gccgcagctg
     1441 tgcaggatgg ttcccagtat tctgtgctgc tgatcatcac tgatggtgtc atttcggaca
     1501 tggcacagac caaggaagcc attgtcaatg ccgccaaact ccccatgtcc atcatcatcg
     1561 tcggcgtggg tcaggccgag ttcgatgcca tggtggagct ggacggtgat gacgtgcgga
     1621 tctcctccag ggggaagctg gccgaacggg acatcgttca gtttgtgccc ttcagggact
     1681 acgtggaccg caccggcaac cacgtactga gcatggcccg cctggcccgg gatgtgctgg
     1741 ctgagatccc cgaccaactg gtgtcctaca tgaaggcaca gggcatccgc ccacgcccac
     1801 caccggctgc gcctgttcag tcacccccac agtccccagc ccactcacct cctgggtccc
     1861 ccgttcacac gcatatctga agccggcggg accaagggcc tggagggtgg gctgaggccc
     1921 cactctcctc atgctcgact acccagactc tactcggagg gccagcggga aatggggtat
     1981 ccaaggcctc accccgcttc ctggactcaa cttcacatct aaatccaggg acctgagggt
     2041 ggtatagaag acaaggggta cacaagattc tgggactgag tggactcccc tagtccatgc
     2101 tagacaaccc ccaagactcc cctatttttg cagcccagct ggacctcctc cagctcctgt
     2161 cccctcctgc cctagtgtct agtgtcccca gtcccatgag actccccctg tcctgtttcc
     2221 agggaacccc aggctggtgg gctaccaggg atgcatgtga ccctcttagg gacaccatat
     2281 atgagcagat agagtcccct tcccgatcct caaaggctca gcggtatgct agaagtgttc
     2341 tagaaggttc acccgagcta tcccaggtaa cctgtagcat tgagatagct cctgctcgct
     2401 gcccttcggt ggttatgaga caagagacgg gggcggccct gagcgccaac ccctccacac
     2461 ccacgtccag catagcctct gctccctggg cctcagtgtt cacacctctg tgatgacagg
     2521 atcggtcagg tggtccagcg tttcctgagc catcccgagg gtgcatccat tttcacacag
     2581 cctccccaca acttcctcat gaccaccgtc cacacccagg ccatctagac tccggggtca
     2641 ccctgtcaca tcctgtcacc ccatgcccca gcccttcaaa actcctgccc ctgcagtgag
     2701 aaagtggcaa agggcttttc agctaaggtc accccagtga ccaccatcct ttgtccactg
     2761 gggcaggtct tgcatgtgtc cctaatgccg catggggtcc ctgcctgcca tctcccatct
     2821 gacccacctc tgtcatgcat ggtgatggtg atgtgtttac tgtctggtcc tgtggctgtc
     2881 tgagaccgtc tctgtggaac ttgccttaaa ctgaagtaaa ccagttcttt tagtaaaacc
     2941 ccttctcctt ggaaaacagc tctgaccctt gcccagcatc tctctctctg ctgcctcggt
     3001 tcttcccttc ggccacgccc ctgtcaggct gtgtgtgagg catgggggtg catgacggga
     3061 aatgaaaccc acctcccaca aacatcatat gtgagcagag cctgtggggc ggccatcggg
     3121 gactgtgaca gaggcatgct tgcctagtcc tcaaaggctc agtggtatgc tagaatgttc
     3181 tagatgcgga tctctagcct cactagtgct gtcacaagta gcttgtgaca ttgagatgtc
     3241 tcctcctcaa cccagaggtc aactcacctg ccgggctggg tatgtggcca gcacctggac
     3301 tccgccatga gagacagcaa gcatagagac actaaggtct agagccttgg cttcaggcag
     3361 tggtaagagt caggagcaac aggagaggac accaagagag aggtgtttta ggcgagcccc
     3421 agagaaatga gtagagagcc atgcagatgc cagggtgaag aggactctgg gatgagtaag
     3481 ggtaacgtgc cgggtaggag cctggtatgt ttgactttgc tgtgatggga gctaacctaa
     3541 ggaagagaat gcaggcgatg ggggtcaggg cggggtgggg ggtggggatg ggggtgcaga
     3601 atgcaccggg ccttacggca aggcctctga catctgctct ggagagaagt agccattgag
     3661 gaagggagag agacaagcac atgacccgaa cctccccaac gtgtggatcc gctgtcacgg
     3721 gtcgatcact gtttctccat ctctcaacaa acgtctcctg agaacccgtt ccaggcctgc
     3781 gcaggggtca gaggcccttg gctcagtccc cggtgtcttc ctctgggcta aatcagccat
     3841 cacaaagtag cagtgccagc cagttggaag gtctgggagt gtggtgctaa agggtactct
     3901 ggcccatccc ggatgagccc ccccaccccg gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3961 gtgtgtgtgt gtgcgcgctc gcgcacgtgt ggccagcata gtgtcagtta gggtacatgt
     4021 gttcattgat gatgaaattg ttagctttgc gggtggatca cacaggacct atgtgacttc
     4081 aggcccatag taggcatctc ccttggtccc tcttcacaag ttggggccat caccaactcg
     4141 gatcgtgggg acaaggacca cgagcgaata cacgcacaca caaacgctgt ccaattggcc
     4201 ctcgaggcag cccttctgag gctgtaccca agaggaatcc tgtactaatt atcctccagc
     4261 tcggggcttg tttacttctg atgacttcac ggtaaattag agctgactca c
//
