LOCUS       NM_001109003            4163 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus copine 4 (Cpne4), mRNA.
ACCESSION   NM_001109003 XM_001069881 XM_001069960 XM_001070003 XM_345977
VERSION     NM_001109003.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4163)
  AUTHORS   Takizawa,C., Minematsu,T., Nakagami,G., Kitamura,A., Koudounas,S.,
            Kunimitsu,M. and Sanada,H.
  TITLE     Expression levels of NPPB, ITGB6, CPNE4, EML5, and ITSN1 in fresh
            exudates swabbed from critically colonised and infected
            full-thickness wounds in rats
  JOURNAL   Int Wound J 20 (4), 1088-1097 (2023)
   PUBMED   36307995
  REMARK    GeneRIF: Expression levels of NPPB, ITGB6, CPNE4, EML5, and ITSN1
            in fresh exudates swabbed from critically colonised and infected
            full-thickness wounds in rats.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473954.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_345977.3, XM_001069960.1, XM_001069881.1, XM_001070003.1.
FEATURES             Location/Qualifiers
     source          1..4163
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..4163
                     /gene="Cpne4"
                     /note="copine 4"
                     /db_xref="GeneID:367160"
                     /db_xref="RGD:1308844"
     exon            1..393
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            394..468
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            469..628
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            629..836
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     CDS             808..2511
                     /gene="Cpne4"
                     /note="copine IV"
                     /codon_start=1
                     /product="copine-4"
                     /protein_id="NP_001102473.1"
                     /db_xref="GeneID:367160"
                     /db_xref="RGD:1308844"
                     /translation="MPGALLTPASMKKMSNIYESAANTLGIFNSPCLTKVELRVACKG
                     ISDRDALSKPDPCVILKMQSHGQWFEVDRTEVIRTCINPVYSKLFTVDFYFEEVQRLR
                     FEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGKSSITVIAEEL
                     SGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWK
                     SFKVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECI
                     NPKYKAKKKNYKNSGMVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNS
                     CSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFN
                     EDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILL
                     ILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPV
                     LRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEVYESSRTLA
                     P"
     exon            837..1017
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1197
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1269
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..1344
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1428
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1518
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1617
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1618..1704
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1705..1764
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..1898
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1899..1953
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            1954..2005
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            2006..2139
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            2140..2376
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
     exon            2377..4163
                     /gene="Cpne4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcaaatgtc ttagttctgg agttgggatg ttcaatctct gtaaacagtg tttgcttcct
       61 actttcatag atccaacccc aagtttactt gtctgaaata aagagtcaaa gaggagccag
      121 ctagagcaag accctccagc cactccctgt gccctttagg gtcaagatga gcttggtcat
      181 ggagtggagt caaaagttta acctaacagc actgctctgg cctcagaatg gactctttat
      241 ttgccatatg cctaacagat ccagtcaggg ttcatgagcc accttcatca aattgcttct
      301 cctcctccaa tcctgtgcta tttataaact cgtaagccca ggtctagacc cacagaccag
      361 gatatctctt tgactgttag ccatatttgc tattgttctg ttagctccct tcgtatcgtg
      421 atcgatgtga catgaccttg aaaggtttac tcggggtaag tttcagagta cccctcagta
      481 atgccatcag atgggtgaac tgaacaacac agagtcagaa ccctcatgac ctaaatcatt
      541 tctggaaaca acatcataga caccttcaga ggtgtctcat ctcggacatt catttcctca
      601 ggctgaccat gtcacccacc aaaggtagat ttaacaagaa tatacctgga gttgcccacg
      661 gcagcagcca gcagacagat gtgcaatcct tgtgtcaacg tctcccttcc tacaaaaagc
      721 taagagcggg accagacgcg ccggatcttc cgggtgaaca gcaaagggag cggtggcagg
      781 gatagaacag ataaactttt tcagcgcatg cctggagcac tgcttacgcc tgcctcaatg
      841 aagaagatga gcaacattta cgagtcggct gccaacacgc tggggatctt taacagcccc
      901 tgcctgacca aggtcgagct gcgtgtggcg tgcaaaggca tttccgacag agatgctctg
      961 tctaagccgg acccttgcgt catcctcaag atgcaatccc acgggcagtg gttcgaggtg
     1021 gacaggacgg aagtgattcg tacctgcata aacccagtgt actcaaagct gtttacggtg
     1081 gacttttact ttgaagaggt ccaacgtctc cggtttgaag tccatgacat cagcagcaac
     1141 cataatgggc tgaaggaggc tgacttcctg ggtggcatgg aatgcacact tggccagatt
     1201 gtctctcaga gaaagctttc caagtccttg ctaaagcatg ggaacacagc ggggaagtcc
     1261 tccatcacgg tgattgctga agaattatca ggcaatgacg actacgtgga gcttgcattc
     1321 aatgcacgga aattggatga taaggatttc ttcagtaaat ccgacccctt cctggaaata
     1381 ttcagaatga acgacgacgc cactcagcag cttgtgcacc gaacagaggt tgtgatgaat
     1441 aacttaagcc cagcctggaa gtcattcaaa gtatcggtga actctctctg cagcggagat
     1501 ccagaccgca ggctgaagtg catagtgtgg gactgggact ccaatggcaa gcacgacttt
     1561 attggagaat tcacctctac cttcaaggag atgagaggcg ccatggaagg gaaacaggta
     1621 cagtgggaat gcatcaaccc caagtacaag gccaagaaga agaattacaa gaattcagga
     1681 atggtgattc tgaatcagtg caagatccac aagatgcatt ccttcttgga ctacatcatg
     1741 ggtggctgtc aaatccagtt tacagtagct atagacttca ctgcctctaa tggagacccc
     1801 aggaacagct gctccctgca ctatatccac ccataccagc ccaatgagta cctaaaggcc
     1861 ttggtggctg tgggagagat ttgccaagac tacgacagtg acaaaatgtt cccggctttt
     1921 gggtttggtg ccagaatacc cccggagtac acggtctctc atgacttcgc aatcaacttt
     1981 aatgaagaca acccggagtg cgcaggaatt caaggagttg tggaagctta tcagagctgc
     2041 cttcccaagc tccagcttta tggtcccacg aacatcgctc ccatcattca gaaggttgcc
     2101 aagtcagcct cagaggagac aaacaccaag gaggcttcgc aatatttcat cctgctgatc
     2161 ctgacagacg gtgtcatcac agacatggct gacacccggg aggccatcgt ccatgcctcc
     2221 caccttccca tgtccgtcat catcgtggga gtggggaacg ccgacttcag tgacatgcag
     2281 atgctggacg gtgacgacgg aattctaagg tcacccaagg gagagcctgt ccttcgagac
     2341 atcgtccagt ttgtgccctt ccggaacttc aaacatgcgt cgccagctgc ccttgcaaag
     2401 agcgtgttgg ctgaagtccc aaatcaagtc gtggactatt acaatgggaa agggattaaa
     2461 ccaaagtgct cgtcggaagt gtatgaatcg tcccggacgc tggcaccgtg aactccacac
     2521 ttttacggag ttcagaagca ctgttcattc tattcctgca ctttaaaata acaaaaacaa
     2581 aaacaaaaac aacaatatac atttaaagat agcacgtttt ggtgattttt aactattttt
     2641 ttttgcatgt gaagccccaa gccctggatc tgttaagccc ttgtattgtt aaagactttt
     2701 tacaaagaaa tacagtcata acatactctt tacagcatgt cgccttgaaa taaaatggta
     2761 tatgtatcca tttttatacc ggtttgttga aattttgcta aatttcttat tatctttaca
     2821 ctgtaaagca ttttgaaaca tttcctgaat gttgatagcc aaagggtata tttggcttac
     2881 tctcctatag gatgagagac ttttcaaaat ggcagatgca tggactgtat tttgcatgtt
     2941 taaaataatt ataataaaaa taaccttaca ctgtttttgc agttgttatc tataatctct
     3001 ccctgctgag aatggtctct ctctactaaa tacatttatg tacctagagg tagtcttttc
     3061 tgaagtgggc ctgggtcatt tgtcccagtc cccttcttta cacactccca tagacacaaa
     3121 ttccccgaga atcttgttct aatggagttt gctaatgccg ggcttgaggt tctgcacgtc
     3181 tcccaaggtc ctcagtgatg ctaacccatt tcttgcactg cactaggact aatgaggttc
     3241 tgaacttgag gctttcgcca cagagatcac gccaaacaga gcagctccta gcctgcttgc
     3301 ccacagcacc tcttctgccc ccaatagctt agaggaccag cctggcccgt ctctgggatg
     3361 agactagaaa gttaggagac tgattccaga agctgtccac cacacatcag cctcccggct
     3421 ttatagcccc gcctcttcct catccagact gaggagcact ccttccagct tgctcccgat
     3481 tggctaaaag aggcaccaca gcttgctgcg tgggtgggtc caattttatg tcagttccta
     3541 gaaattatct cccaggattc ctcccttgga ctttgagtgg aatcttgatc atgccaaata
     3601 gcaatatggc tgcccaactt tctgttctaa tcacttggtc tttgagctca ctgtgggggc
     3661 accttttggc ctcttttgta tcactcctga gtacaatttc cataagcaga agtgccctgg
     3721 aattgtgtag gatggggaca ttttgtctga atctaaggaa gtcttaaaac caaaacaacg
     3781 acttcttttc ttatgatctt ctctcggaga aatggacaaa tgttttataa gctgtaaaag
     3841 gcacaaaatg aaacttattt ttggtcagaa aaatagtgaa gtgtatccta agcaaaaaaa
     3901 aatctgttgt tggggaagtt tttggttctg tttttttttt tgtttgtttg tttgttttaa
     3961 aggggaaaca ataataatta attaagcaaa tcaaatgtct tgtacaattt ccagagttat
     4021 aattatagat tatcttgcaa atacatgtca accaaatgca taacattttg ggaatgatgg
     4081 tttaaaacaa atgtatgaca gaaaaaaagt cacaaatgtt taaattgtat tgttttctga
     4141 ataaattggg tacttacaga att
//
