LOCUS       NM_001256466            2305 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus copine 2 (Cpne2), mRNA.
ACCESSION   NM_001256466 XM_002725371 XM_039097939 XM_574259
VERSION     NM_001256466.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Perestenko,P.V., Pooler,A.M., Noorbakhshnia,M., Gray,A., Bauccio,C.
            and Jeffrey McIlhinney,R.A.
  TITLE     Copines-1, -2, -3, -6 and -7 show different calcium-dependent
            intracellular membrane translocation and targeting
  JOURNAL   FEBS J 277 (24), 5174-5189 (2010)
   PUBMED   21087455
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On or before Sep 13, 2022 this sequence version replaced
            XM_039097939.1, NM_001256466.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.42153.1,
                                           SRR26643297.50915.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               JAXUCZ010000019.1  10477607-10477783   c
            178-395             JAXUCZ010000019.1  10462762-10462979   c
            396-575             JAXUCZ010000019.1  10460288-10460467   c
            576-650             JAXUCZ010000019.1  10459828-10459902   c
            651-722             JAXUCZ010000019.1  10458186-10458257   c
            723-806             JAXUCZ010000019.1  10456893-10456976   c
            807-896             JAXUCZ010000019.1  10456689-10456778   c
            897-995             JAXUCZ010000019.1  10456095-10456193   c
            996-1082            JAXUCZ010000019.1  10455657-10455743   c
            1083-1142           JAXUCZ010000019.1  10454519-10454578   c
            1143-1276           JAXUCZ010000019.1  10453769-10453902   c
            1277-1331           JAXUCZ010000019.1  10451164-10451218   c
            1332-1383           JAXUCZ010000019.1  10448543-10448594   c
            1384-1517           JAXUCZ010000019.1  10447474-10447607   c
            1518-1754           JAXUCZ010000019.1  10441909-10442145   c
            1755-2305           JAXUCZ010000019.1  10440245-10440795   c
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p13"
     gene            1..2305
                     /gene="Cpne2"
                     /note="copine 2"
                     /db_xref="GeneID:498972"
                     /db_xref="RGD:1586036"
     exon            1..177
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            178..395
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     CDS             216..1862
                     /gene="Cpne2"
                     /note="copine II"
                     /codon_start=1
                     /product="copine-2"
                     /protein_id="NP_001243395.1"
                     /db_xref="GeneID:498972"
                     /db_xref="RGD:1586036"
                     /translation="MAYIPDGGPPTAGGIPLGSQCCVCKVELSVSGQNLLDRDVTSKS
                     DPFCVLFIEDNGRWMEFDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSS
                     AQLDEHDFLGQFSCSLGTIVSSKKITRPLLLMNDKPAGKGLITIAAQELSDNRVITLS
                     LAGRKLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLC
                     DGDLEKPIQVMCYDYDNNGGHDFIGEFQTSVLQMSEARDGVPLEMECINPKKQRKKKS
                     YKNSGIIILRSCKIHRNYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMG
                     TNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVD
                     GIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATEQQTATQYFILLIITDGVISDM
                     EETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDNRRLRSHTGEEAARDIVQFVPF
                     REFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA"
     exon            396..575
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            576..650
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            651..722
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            723..806
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            807..896
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            897..995
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1082
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1142
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1276
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1331
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1332..1383
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..1517
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1754
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
     exon            1755..2305
                     /gene="Cpne2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagccggtg ctgcagccgc ggcccgagga gggccagccc cagcccgggc gagcgcagga
       61 gtgggtacgg ccgcgcgggt agcgccctgt ccctgtcccg cgtcgccgcc cgaccgacag
      121 cacagcgcgc ggggatgccc cggcgacccg gagcacgctg aggcttgggg aagcgcgact
      181 gccaggaact gttgctgctg ccaccaccaa cccccatggc ctacattccg gatgggggcc
      241 ctcccactgc agggggcatc cccttgggtt ctcagtgctg tgtgtgcaaa gtggagctgt
      301 cagtgagtgg ccagaacctg ctggaccggg acgtcacctc caagtctgac cctttctgtg
      361 tcctctttat agaggacaac ggcaggtgga tggagttcga cagaacagaa acagccatca
      421 acaacctcaa cccggccttc tctaagaagt ttgtgctgga ctaccacttc gaggaggtgc
      481 agaagctcaa gttcgctctg tttgaccagg acaagtccag tgcacagttg gatgagcatg
      541 acttcctggg ccagttctcc tgcagccttg gcacgattgt ctccagcaag aagatcacta
      601 ggcctctgct gctgatgaat gacaagcctg cagggaaggg cttaatcacg atcgcagccc
      661 aagagctgtc agacaaccgg gtcatcacac tgagcctggc cggccggaag ctggataaga
      721 aggacctctt tgggaaatca gacccgttcc ttgagtttta taagccggga gatgacggca
      781 agtggatgtt ggtccacagg actgaggtga ttaagtacac cctggatcct gtatggaaac
      841 cattcactgt accgttggta tccttgtgtg atggtgacct ggagaagccc atccaggtta
      901 tgtgctacga ctatgacaat aatggaggtc atgacttcat cggcgagttc cagacctctg
      961 tgttgcagat gagcgaggct cgggatggtg tcccgctgga gatggagtgc atcaatccca
     1021 agaagcagag gaagaagaaa agctacaaga actcgggcat cattattctg agatcatgca
     1081 agatacaccg aaactactca ttcctggatt atattctggg aggctgccag ctcatgttca
     1141 ccgttggaat agacttcaca gcctccaacg ggaatcccct cgacccttct tctctccatt
     1201 atatcaaccc catgggcacc aatgaatatt tgtcagccat ctgggcagtg ggacagatca
     1261 ttcaggacta tgacagtgat aagatgtttc ctgctctggg gtttggggcc cagttacccc
     1321 cggactggaa ggtgtcccat gagttcgcta tcaacttcaa ccccactaat cctttctgct
     1381 caggcgtgga tggcatcgcc caggcgtact cagcctgtct gccccacatt cgcttctatg
     1441 gccccacaaa cttctcccct atcgtcaacc acgtggcccg gtttgcagcc caggccacag
     1501 agcagcagac agcgacgcag tacttcatcc tcctcatcat cactgacggg gtcatcagtg
     1561 acatggagga gacacggcac gccgtagtgc aggcctccaa gctgcccatg tccattatca
     1621 ttgtgggtgt gggcaatgct gactttgcag ccatggagtt tctagatggg gacaaccgta
     1681 gactgcgctc acatacaggc gaggaggcag cccgggacat tgtgcagttc gtgcccttcc
     1741 gagagttccg caatgcagcc aaagaaacgc tggctaaagc ggtgcttgca gagcttcctc
     1801 agcaggtagt gcagtatttc aagcataaaa acctgccccc caccaactcg gagcctgcct
     1861 gagcgcggga ccagccacag catgccagct gagcccccag cctccccagg aacatgcacg
     1921 ttcaccctgc ttcctcgtgg gtggcctttt tttttttttt aaaccagtcc acatttttat
     1981 tttttacaac tggacctcca ccccaacttc cccagcccat atgggctccc tttgtcagag
     2041 tcaatgatga tgcttccagg acaaaacaac tccctcaccc cgccctcctg ccactctaag
     2101 tattgaatgt actttgtata attttagtgg aattattgtt atcaaagaga ataaaatttt
     2161 tacaatcgta accggctttt tctaagtaac tagctgcaag aaggaatgta tccctactgt
     2221 gtactttgta tggtggtctg ctgtttttat actgtgacta tgttctactt gtcaaactca
     2281 gggtaataaa ggagtttcag atgtt
//
