LOCUS       XM_039095224             857 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytoplasmic polyadenylated homeobox 1
            (Cphx1), mRNA.
ACCESSION   XM_039095224
VERSION     XM_039095224.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095224.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..857
                     /gene="Cphx1"
                     /note="cytoplasmic polyadenylated homeobox 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 41% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:502042"
                     /db_xref="RGD:1565219"
     CDS             153..857
                     /gene="Cphx1"
                     /codon_start=1
                     /product="paired box protein 6 homolog"
                     /protein_id="XP_038951152.1"
                     /db_xref="GeneID:502042"
                     /db_xref="RGD:1565219"
                     /translation="MPLMLNLFCCCCFHFFPEKEVNHSRARAGCRRGKSKPRHKFTND
                     ELKRLKQEFKCTPYPDFTTRDELARQFRCQVDVIDNWFQNKRARTPQELKDTFSAIRG
                     MRKSGDYMLIGRQDTQTEEASREQYGSCDYVVQSIGTKSSGVVDTLPPVSESRYVGDQ
                     PETQESQYSTFSPADYVPCTQGQRQMDYTYSPMFSGQQQNNWEYQQQQQHPQSYQERA
                     SLADWLIVHQSHRQSL"
ORIGIN      
        1 ggttggggat ttagatcagt ggtagagcgc ttgcctagga agcgcaaggc cctgggttca
       61 gtccccagct ctgaaaaaaa aaagaaccaa aaaagaaaaa aaaaaaagaa aaaagaaaac
      121 aaacttcagt catcaaacaa gcctttctct agatgccact gatgctcaat cttttttgtt
      181 gttgttgttt ccattttttt ccagaaaaag aagtcaatca cagcagagca agagcaggat
      241 gtagaagagg aaaatcaaaa ccgagacata aatttaccaa cgatgagctg aagagactta
      301 aacaagaatt taaatgcacc ccttatccag atttcacgac cagggatgag ctggcacggc
      361 agtttcgatg ccaagtggat gtgatcgata actggtttca gaataaaagg gccagaaccc
      421 cacaagaact gaaagacaca ttttctgcca tcagaggaat gcgcaagtct ggagactaca
      481 tgcttatagg tcgccaggat acccagactg aggaagcttc tcgtgagcag tatgggtcat
      541 gtgactatgt ggtccaaagc atcggaacga aatcaagtgg cgtcgtggat actcttcccc
      601 cggtgtctga atcgcgttat gtgggtgacc agcctgagac acaggaaagc caatattcca
      661 cattctctcc tgctgactat gttccttgta cgcaggggca aaggcagatg gattatacct
      721 actccccaat gttctcagga caacagcaga ataactggga atatcagcaa caacagcagc
      781 atcctcagag ctaccaagag agggcctcct tggcagactg gctcattgtg caccagagtc
      841 atagacagag tctctag
//
