LOCUS       XM_002729287            5739 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cadherin-like and PC-esterase domain
            containing 1 (Cped1), transcript variant X1, mRNA.
ACCESSION   XM_002729287
VERSION     XM_002729287.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002729287.6.
            
            On Jan 21, 2021 this sequence version replaced XM_002729287.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5739
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5739
                     /gene="Cped1"
                     /note="cadherin-like and PC-esterase domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 31 ESTs, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 77 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:500046"
                     /db_xref="RGD:1563491"
     CDS             929..4009
                     /gene="Cped1"
                     /codon_start=1
                     /product="cadherin-like and PC-esterase domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_002729333.2"
                     /db_xref="GeneID:500046"
                     /db_xref="RGD:1563491"
                     /translation="MVCRPGFLCRRRFCPRPFLVGLVVAICLFYQTLTLRGTKKIAAE
                     VSGTVPHTPSQTQGSRCEKDYPQDKRCFLLSANAQEIRKIEELIERHFGGRSRRAVLH
                     RPPSSSGAELQTHQNLLAQHGYSVVTVEERLGGNPGLELLDQGGLNSWDLFICLPSRE
                     ADGKPCIPREHMCRLSLHQRVNVLPEIQPQLCRKEGLCEIIRRFPELRLPVSSSVCLG
                     QGTQSRLSVSSHLSKAEKPRIWKPWNWQREQLNQTTLVAPREAIFRAEELSVILKAYV
                     LVTSLRPLRAFIHSTGTVWSPPKKKRFTVKLQMFFETFLRTSSPLQALDSLKEAISKL
                     LLVAEVFSDSSTLGPKTFHRCRHCFQLMTFDIGYGDPGNPVVLQVHERLKFHDDENLH
                     VEDQNTERILLRDTFDFLFSNASSLPVVSEMLQRPERAGASVDGKYQKELNQCLSLEE
                     IHSIRTFVKELGNLGQFQLLFPSTVPGIQSLMGEFYDTATPGSVLSHYWSLLNVFEQF
                     WLVNKKAQLHSLEWNSSTRNQTVEKPHRSLEAIQSKKAAVPQVLYEDKDKHCSDEEEA
                     QCQIKKIVTYPRLELSPEFNAKIKDYYCEVPFDVLTVRIRAETSKCQCKVHLQEQTGP
                     SFANYPLGLGMNRISMLVVDESRAEGDALTTYKLTIYREDRPSLPFFEDFTACGFVQD
                     CDLLIHPEETCGLQPISADYIETISQPEIQSCQSGDTKGQWIVPCLTCSDNRTCDWRE
                     ITWQPHNCQHDILSKPELQQCLQGRKILFIGDSTNRGMMYYLIERLNETLQEWQKLHG
                     TKLYPSVNGGKTLISYSYYPQFWISPSLRPAFEKALERLLQRSQPLENTDQTVLVVGG
                     VQWLNSNHLQIIHKVLKRENLQNILVIIKTLGIGFHLPVDGVHFLTQSEVRNLYKENL
                     SILEAAKKYGYEVVDTFTITMGRHKEFLQGNCGCHFHEVVKSKFARPHHVIKMKRSKN
                     HIVGKYFSSQSKLKQHNSAPNVHSPYHVRGPINQVCAEILLSRMCVSQRSARVP"
ORIGIN      
        1 ttagctccgc cccgctcggc ctgggtggca gggatggccc gggtcctccg gctctcggcc
       61 ctgtgtgcag ccggcacgcg cgtgtctccg cgtgtctgcg cgtgtgtgtc cgtgcgtgag
      121 agtgagatga agtggagtcc tacgcctggg tgcttcctcc caagtgattt tcatcagcaa
      181 tccattaagg ggatcatgaa aaaaaaaaat ctggctaaaa ggatgaaaac tgagtaagta
      241 cacagaactt tgaacttgaa acggaatgag accaaacgca agcaaaaccc tgacagtgac
      301 cacatacatc caaactgcta tcccccaccc tctttttatg ttaaaagccg tgaacgctag
      361 cagccaagtg gcaatttaaa actgaacgaa aggaagcagt tctgcaacat aaaaggctga
      421 gagcgggatg gctttaaaag cggagggaaa atgagaaact gctaggacaa cctggccggc
      481 gcccagctgt gcaacaggct ctccgcgttt aatcggctgc gtctctcagg gctggtttct
      541 gccttcagac ccgcattact gtgctttctt tttgccccca aagaagagac aagctgaact
      601 cctgagttta agaatgttat ggaagtaaga cattgccgga aggaactctt ggcagctggg
      661 gatgcatttg gatgatttct tacaactatc tttattttga catcttaaaa aaaaaaaaat
      721 cagggcagtc acttcttact gtccttcatg gaagggctat tgttaaccac ctctgaccgc
      781 tgggtcctgt gaatctttgg catgaacttt cggaaagttc tccagtggag atggggcgaa
      841 cttgattaga attgtgcaaa agcaagacag atgtgtgttt ttttcatact gacaacgtgg
      901 ccaggggcca agtgaacctg gactggtcat ggtctgtcga cctgggttcc tttgtcgccg
      961 gcgattttgc ccccgacctt tcctggtggg tttggtggtg gcaatctgtc tcttttacca
     1021 gaccctaaca ctcagaggga ctaagaagat tgcagcggag gtctctggga ctgtcccaca
     1081 caccccctct caaactcagg gtagcagatg tgagaaagac tacccgcagg acaaacggtg
     1141 cttccttctc tctgccaacg ctcaagaaat caggaagatt gaagaattga ttgagagaca
     1201 ctttggcggt cgcagcagaa gggctgtcct ccatagacct ccatcttcca gtggagcaga
     1261 gcttcagaca caccagaacc tccttgctca gcatggctac agtgtggtca ctgtggaaga
     1321 aagacttggt ggtaatccgg gcctggagct gctggaccaa ggtggtttga actcctggga
     1381 tctgttcatt tgcctgcctt ctagggaagc tgatgggaaa ccctgcatac ccagggagca
     1441 catgtgtcga ctaagcctac atcaaagggt gaatgtgtta ccagaaatac agcctcagct
     1501 ttgcagaaaa gaaggcttgt gtgaaataat cagaagattt ccagaactgc gacttccagt
     1561 gagttcttct gtgtgcctgg gtcaggggac acagtcacgg ctgagtgttt ccagtcatct
     1621 ctcaaaagca gagaagccac gtatatggaa accatggaac tggcaacgcg aacagttgaa
     1681 tcagactaca ctcgttgctc cgcgtgaagc aatcttcaga gcagaagagc tatctgtgat
     1741 tcttaaagcg tatgtgttgg tgacctcctt aaggcccttg cgtgccttca ttcattcaac
     1801 tggcacggta tggagccccc cgaagaagaa acgcttcacc gtcaagctgc agatgttttt
     1861 tgagacattc ctgaggacca gttcacctct gcaagccctg gacagcctga aggaagccat
     1921 tagcaagctg ctgttggtag ctgaggtgtt tagtgactca tctactttgg gaccaaaaac
     1981 ctttcataga tgtaggcact gctttcagct tatgaccttt gacattggtt atggagatcc
     2041 ggggaatcct gtggtgctgc aggtacacga gcgtttaaaa tttcacgatg atgagaatct
     2101 ccacgtagag gaccaaaata cggaaagaat cctcttaagg gatactttcg acttcctctt
     2161 ctccaatgcg tcttcccttc ccgtggtttc tgagatgctg cagaggcctg agagggcagg
     2221 tgcatctgtg gatggaaagt atcagaagga gttaaatcag tgcctgtcgt tagaggaaat
     2281 tcactcaatt aggacttttg taaaggaact tgggaatctg ggccaattcc aactgctctt
     2341 cccatccact gttcctggga ttcagtctct gatgggtgaa ttttatgata cggcaactcc
     2401 tggctcagtc ctgtcccact actggtctct tttaaatgta tttgaacaat tttggctcgt
     2461 gaataaaaag gcacagctac attcactgga atggaattct tcaacaagga accagaccgt
     2521 tgagaaacca cacaggtcat tggaagccat ccaaagtaaa aaagctgcag ttccacaagt
     2581 tttgtatgaa gataaagata aacattgcag cgatgaggaa gaggcacagt gccagatcaa
     2641 gaagattgtc acctatcccc gtttagaact gagtcccgag tttaatgcga agatcaaaga
     2701 ctattactgc gaagtgccct ttgatgtgct aaccgtgagg atcagagccg agacttccaa
     2761 gtgtcagtgc aaggtgcacc tgcaggagca gacagggcca agctttgcca actatcctct
     2821 gggattagga atgaacagaa tctccatgct tgtggtagat gaatctcgag cagagggtga
     2881 cgccctaacc acgtataaac tcaccatcta cagagaagac cgcccgagtc tgcccttctt
     2941 cgaggacttc acagcgtgcg gctttgtaca agattgcgat ttattgattc acccagaaga
     3001 aacctgtgga ttgcagccta tttctgcaga ctacattgaa accatttcac agcctgaaat
     3061 acagagttgt caatctgggg acactaaagg ccagtggatt gtgccttgcc ttacttgttc
     3121 agacaacagg acctgtgact ggagagaaat aacctggcaa ccacacaact gccaacatga
     3181 catcctaagc aagccagagc ttcagcagtg cctgcaagga aggaagattc ttttcatagg
     3241 agattccacc aacaggggga tgatgtatta tctaattgaa agactgaatg aaacacttca
     3301 ggagtggcag aagctgcatg gcactaaact ctaccccagt gtcaatggcg ggaagacgct
     3361 gatcagttac tcctactatc cccagttctg gataagccct tcattgagac cagcatttga
     3421 gaaagcactt gaacgtctct tgcaaagatc acagccccta gagaatactg accagacggt
     3481 attggttgtc ggtggtgttc agtggcttaa ttccaatcac ctgcaaatta ttcacaaggt
     3541 tttaaagagg gaaaatttgc agaatatcct agtgatcatc aaaactttgg ggattggatt
     3601 ccacctgcca gtggatggag tgcatttctt aacacagagt gaagtacgga acttatataa
     3661 agaaaatctg agtattctgg aagctgccaa aaaatatggc tatgaagtag tagacacatt
     3721 cactatcacg atgggacggc acaaagaatt tctgcagggc aattgtggat gccattttca
     3781 tgaggtagtg aagtctaagt tcgccagacc gcaccacgtg atcaagatga aaagatccaa
     3841 gaaccatatt gtggggaaat acttcagcag tcaaagcaaa ctgaagcaac acaattctgc
     3901 cccaaatgtt cactcaccat atcatgtcag aggcccgata aaccaggttt gtgctgaaat
     3961 cctgctcagc aggatgtgtg tgagtcagag gtctgcgcgg gttccctgaa ggagaaccca
     4021 gttcacagtt agacataacc tttcacctgg acctgagagc caaacgtgcc tgacacatac
     4081 tttgcaatga cgaccctcac cagtgcaagc atgcacagca aagcacacag cccacagaca
     4141 cgcaatgaca cacttttctg atgtctatac acactcagaa gtgaccttga gcatccgtta
     4201 gtttcaggtc gaagcacaga gctatacaga gatcacttga actgtgatca caaaggacga
     4261 ccgtgtggac caggtattgg actgcaatga taaaaggaaa gacagaaatg caaccgcgtg
     4321 gggatagggc gatgctggtt ctgtgctctc ctcgacatag gaggagaaaa aatgtttttc
     4381 taccaatgaa aaaacgtcga agaagcaaat acattccaca tgtagggaag aataacaccg
     4441 aagttctcta ccgggagaag cggggtattt acggtgattt gaactttgtg gatccaatgc
     4501 ttatgaaaaa cacttcttat gcttttaaaa tggtacgatg gaagggagag aacaggagtg
     4561 attctctaca gtggaattca gagattctcc gagagcaata agaagcaacg ttatattcaa
     4621 ctctgagttc ctgtgtgttc ctcaaagatc cccccacccg tctgtgagct tagatgggaa
     4681 gcacagtcta agtggaggat gtgcatactt ttaaagtgtg gtacaaaata aagttccccg
     4741 cctgttatgc tgtatatttg tggatgctgt tactaaggaa gcctttactg cctttacctg
     4801 cccctataga cctatttatt ttaagacaat ggttacattt cagatattgt gcaaaggatt
     4861 gcagattctc aaatgtaaaa gcatgaagcc tttcctatat atccacaaat agtactattt
     4921 gactagtatt atattcttct ttgaacaaac atgtttaatt cgaattagag aataggcaca
     4981 caagtatttt gatgagaatt gtggtatagg tatggaatgt acccagtgct agcattgaaa
     5041 actctctctt ctgtcttctt aggcacaaga tggcagattt ccttattata caaattcttt
     5101 gttgggagat aacatttcac tgccatggtg ggttttaaag gatgatctgg gcatgaggaa
     5161 atgaagctga gtgggataac tcagaacgta gatgagatta ctaaatattc aaatacctca
     5221 agttcatcgc cataaaaaaa aatgaaacta ttttgaccta ttgacccatc aattatttag
     5281 aatgaatttc cacctctgcc aaatgctcta tttttatata tattttataa gaatataaac
     5341 atgaatttat attttactgt attaaattat atttaagtac aaatatcact tgatataaac
     5401 attatatgca tttagaaata gattttttga acaatggtac tgaattaact taaaaatgaa
     5461 gtatttttca tatttacatc tatatacaaa caccattttt aggttttgca gttatttttc
     5521 cgtgatagaa catgttagca atcgatgtag cttttccagt caactgtcga tggactgcat
     5581 attcacccac gctgcccagc tagcgctaag cctcactctc ctcataactg tggaaaccct
     5641 ccgaatcaag ttggtctggc attttcctct tcaccattga aataatacta gatttttgaa
     5701 agaactgtca tgtgttatca ataaatgtct agtttgtaa
//
