LOCUS       XM_039092796            7257 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytoplasmic polyadenylation element
            binding protein 2 (Cpeb2), transcript variant X1, mRNA.
ACCESSION   XM_039092796
VERSION     XM_039092796.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092796.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7257
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7257
                     /gene="Cpeb2"
                     /note="cytoplasmic polyadenylation element binding protein
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 39 ESTs, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360949"
                     /db_xref="RGD:1307485"
     CDS             360..3479
                     /gene="Cpeb2"
                     /codon_start=1
                     /product="cytoplasmic polyadenylation element-binding
                     protein 2 isoform X1"
                     /protein_id="XP_038948724.1"
                     /db_xref="GeneID:360949"
                     /db_xref="RGD:1307485"
                     /translation="MRDFGFGVLHTALLRSGSPRSSPGGSAYRPFAAGPSATPFGPLS
                     PPPLPVTGFSEAASPFAIPSGGGAASSAAASSSSPLVAHQQAVQDELLLGLTQQPARP
                     LSGAAAAEQLPSHHPGGGTNAGVTHLLPSQDFKPSLHHPSSSSASSCCCCRTSSPQDF
                     SKRQQQQLSSQKRKELSPPHRPHPPDAKPTPPPLHCPGRFSPPPPTPPPPPGPLLQSA
                     PLAQRPQPFSLPHTQHLPPQDFAPRQRPADLPQLPQLPPSPPAAPRRRHGGAGSPRQT
                     PVAGEGSAAEPPNAGLPPSTPPVNPAPGSMESPNHPLLNSPSTLLPGAALGTSAFSSL
                     QSPDLPHPGGGGGGGPPGGGGGGGSASPPPLPGFGTPWSVQTASPPPPQPPPAPQQQP
                     SQQQQPPQQPPQPQPPGSSAATPGGGGGAGGSLSAMPPPSPDSENGFYPGLPSSMNPA
                     FFPSFSPVSPHGCAGLSVPAGGGGGGGGFGGPFSAPAVPAPPAMNLPQQQPPPAAPQQ
                     PQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSSGWGTASMSWG
                     AMHGRDHRRSGNMGIPGTMNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFR
                     TDNNSNTLLPLQVRMVRSSLQLPAWGSDSLQDSWCTAAGTSRIDQDRSRMYDSLNMHS
                     LENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLNGWVPGAELKSCGLHARSYGRRRGR
                     SSLFPIDDSLLDDGHSDQVGVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEI
                     TASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCV
                     SSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLY
                     GGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVL
                     DDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADR
                     PRQIHFRWN"
ORIGIN      
        1 cgcatgctaa tgaggggcgg ggcggggcaa ggctggcggc ggcgcgctcg cgcgtgccgg
       61 ggcgcgcgac aaggggcggt gcgattgtga ggtggctgct gacgcacgtt ccggggttct
      121 taagcggcga gggcggcggc ggccgaggca gcggcggtgg tgccggagcc ggttccggga
      181 ggtggcggtg gcctccgtga ggggcagcgg gggcccaagt cggtgccccg gctcagtcac
      241 agtgtccctt tcccattgac cccatccttc caccacggcc tcgccgccac ggctcccggg
      301 gctttctagg cggggcaggg gacggggtgc gtctcctgcc gcggccgccg acctgataaa
      361 tgcgggactt cgggttcggg gtgctgcaca ctgccctgct gcgcagcggc agcccccggt
      421 cctcgcccgg cggcagcgcc taccggccct tcgccgccgg gccgtccgcc acgcccttcg
      481 gcccgctgtc gccgccgccg ttgcctgtca ccggcttctc cgaggccgcc tcccccttcg
      541 ccatcccctc gggcggcggc gcggccagct cagccgcagc ttcctcttcc tccccgctcg
      601 tggcgcatca gcaggccgtg caggatgagc tgctgctcgg gctgacacag cagccggcga
      661 ggccgctctc gggggcggcg gccgcagagc agctccccag ccaccacccc ggcggcggca
      721 cgaacgcggg tgtgacccac ctcctcccct cccaggactt caaaccgagt ctgcaccacc
      781 cctcctcctc ctccgcctcc tcctgctgct gctgccgcac ctcctccccg caggacttca
      841 gtaagcggca gcagcagcag ctgagcagcc agaagaggaa agagttgagt ccgccacacc
      901 gtccccaccc tccggacgcg aagccgacgc cgccgccgct ccactgcccc ggccgcttca
      961 gcccgccgcc gccaacgccg ccgccaccac ccgggccgct cctgcagtcg gcgccgctcg
     1021 cccagcgccc gcagccgttc agcctcccgc acacgcagca cctcccgccg caggacttcg
     1081 ccccgcggca gcgcccggcc gacctgcccc agctcccgca gctcccgccc tcgccgcccg
     1141 cagctccgcg gcgccgccac ggaggcgcgg gaagccctcg ccagaccccg gtcgcgggcg
     1201 agggcagcgc cgccgagccc cccaatgcgg gcttgccccc ctcgacgccg ccggtgaacc
     1261 ccgcgccggg ctccatggag tcgcccaacc accctctgct caacagtccc agcaccctcc
     1321 tgcccggcgc ggcgctcggc accagcgcct tcagcagcct gcagagcccg gacctgccgc
     1381 accccggcgg cggcgggggc gggggacccc ccggaggcgg agggggaggc ggctccgcgt
     1441 ctccgccacc gctgcccggc ttcggcaccc cctggtccgt gcagaccgcg tcgccgccgc
     1501 cgccccagcc tccgccggcg ccccagcagc agccatccca gcagcagcag ccgcctcagc
     1561 agccgccgca gccacagccc ccgggctcct ccgctgccac cccgggcggc ggcggcggcg
     1621 cgggcggctc tctgagcgcc atgccgccgc ccagcccgga ctcggagaac ggcttctacc
     1681 ccgggctgcc gtcgtccatg aacccggcct tcttcccgag cttctcgccg gtgtcgccgc
     1741 acggctgcgc ggggctcagc gtgccggccg gcggtggcgg cggtggcggc ggcttcggcg
     1801 gcccgttctc tgctcccgcg gtgcccgcgc cgcccgccat gaatttacct caacagcagc
     1861 cgccgccggc agcgccgcag cagccgcaga gccggaggtc acccgtcagc ccgcagctgc
     1921 agcagcagca ccaggcagcc gcagccgcct tcctgcagca gaggaactcg tacaaccacc
     1981 accagcctct tctgaaacaa tctccttgga gcaaccatca gagcagtggt tggggcactg
     2041 caagcatgtc ctggggagca atgcatggca gagatcaccg tagaagcgga aacatgggaa
     2101 ttccagggac tatgaatcag atatctccgt tgaagaaacc gttttcgggt aatgttatag
     2161 caccaccgaa attcactcgc tctactccat cactgactcc aaaatcttgg attgaagata
     2221 atgtgttcag gacagacaac aatagtaaca cactcttacc cttacaggta agaatggtga
     2281 gatctagttt gcagttgcca gcttggggct cagattcact ccaagatagt tggtgcactg
     2341 cagccggaac atccagaata gaccaggatc gaagtaggat gtatgatagc ttgaatatgc
     2401 actctctgga aaattccctt attgatatca tgagagcaga gcacgatcct ctcaagggtc
     2461 gtttgagcta tcctcatcca ggaaccgaca atctgttaat gttaaatggt tgggttcctg
     2521 gggctgaact caagtcctgt ggcttgcatg caaggagtta tgggcgaaga cgaggtcgat
     2581 cttccctatt tccaatagat gatagcttgt tggatgatgg tcacagtgat caagttggtg
     2641 tgttaaattc accaacatgt tattcagctc atcaaaatgg agaacgaata gaacgcttct
     2701 ctcgaaaagt ttttgttgga gggcttcctc cagatattga tgaagatgag atcactgcca
     2761 gcttccggag atttggacct ttggtagtag attggcccca taaagcagaa agcaagtcct
     2821 atttcccacc aaaaggctac gccttcctcc tctttcaaga ggagagctcg gttcaggcac
     2881 tcattgacgc ttgcattgaa gaagatggga agctctacct gtgtgtctcc agccctacta
     2941 tcaaagacaa acctgttcaa atccgtcctt ggaatttaag tgatagtgat tttgtcatgg
     3001 atggttctca gcctttggat ccccgaaaaa caatttttgt tggaggtgtt cctaggccat
     3061 taagggctgt ggaacttgct atgatcatgg accggctgta tggtggtgtg tgttacgcag
     3121 gaatcgatac agatccagaa ctcaaatacc cgaaaggtgc tgggcgagtg gctttctcca
     3181 atcagcagag ctacattgct gccatcagtg ctcggtttgt tcagcttcag catggtgaca
     3241 ttgataaacg cgtggaggtg aagccatatg tgctagatga ccagatgtgt gacgagtgcc
     3301 agggtgcgcg ctgcggtggg aaatttgccc cctttttctg tgccaatgtc acctgcctgc
     3361 agtattactg tgagttttgt tgggcaaata tccactctcg tgcgggacgc gagttccata
     3421 agccattggt gaaggaaggt gctgatcgcc cgcgtcagat ccacttccgc tggaactaag
     3481 tttagcaaac cggcctccgt ctgacaagga aggaaagggt gcatgtggct tactgtgctg
     3541 cagacactgc gtgcaggaga aataagtgca ttcttctgct tctcacccag ctccgagaca
     3601 tgcatcgtta tcagcagcca aaacactaca agcctcttgt ttttcaccaa aaccctacat
     3661 ctcaggctta ctaatttttg tgatattttc atgttaaaat aaaatgtttt tttgtatttt
     3721 ctccaagtta tttttatatg taaagttaaa attagatatg agaatgtttt gcgtaggggc
     3781 aacagtctgc tgctatacag tgggtgaagc gtgcacttat ttcttaacat gggtttttaa
     3841 cttcaagatc tgccccagta ctttaccaaa ggtagcaaaa taatagtgaa gatggaatat
     3901 gtctgctaca aatgcttatt tttattgttg ctgttttcag tgtgtacata aactaaaaat
     3961 tagggttgat tttgttgctc tccattttga cttgcaagaa ataatacctc aagataatct
     4021 gatttattag ctatttttaa acatttttaa tcacaagctg tattagcttt gctgctatat
     4081 agatgttatg tgtaaatgtc acctattaat acgggattga aaacgttaga gacacactgc
     4141 attgcggatg aaatgcaggc agcacaatat ggccgatact gccatagttt agaatgtgaa
     4201 acaatgcatg tttacttacc tgtgtccacc atatgcatgc actcggacat taactaatga
     4261 ggtgaggtat tgcagatgtt caaaaagctc tcttgaattc taggtagcat gaacaaatta
     4321 gaaaatttgt ttctttacaa aaaagcaaac ttgcatgcat tattgtgact tcaagttaaa
     4381 aatgttgtcc tacatgtgta caatatgcaa attagtttta gattagagag tgcagccatt
     4441 ttgtgatctg gtcagtagtg gaattcgatt ttatgcagac tggatgtaat atttgtaatc
     4501 cctgtgcaat tttgtgatgt gcggttctaa ttcatgtgca gtgatatagt atagataaaa
     4561 gattgaataa aagaaaaaca caggaatttt aaagaaagtt gattttagcc cctttgatag
     4621 ttcatggtta agacatcctt taaaaaccaa agatggccag cacactgcta accagtcacc
     4681 gaatgtgaga cccatggaaa gcccatacat aaagagaggg ttttatagaa gaacacagaa
     4741 ctttagtgaa gtcaaaatgg agatgggaaa atataacaga tggctagttg cataaaattt
     4801 acctttacga caatggtgaa atctggctta aatttgctta catgtttgac ctatgtacct
     4861 ggggtcttct gtctaaactg gggtcactgt tgcatggagc actgttattc ttaatggtta
     4921 agaattgctt ttttaacttt gatgaaggaa tttcagtaat gactttgctt gcattttttt
     4981 cttctttctt tattgaggga gttgcgtgga aaaatgcacg gttctgacct agaacatggt
     5041 tcgttgtggt ggctttcctc tttagagcat cctaacagca gctagccgct gtgttaataa
     5101 tgtaggagtt accctgcagt ctaagcaaag caccccacat ggtaaatgtt gttttttgtt
     5161 gttgttgttg ttgtttttta tttttttaat gcagaactaa gatttttgac tctaaagaga
     5221 gaaaattgca agggtatggc ctgtgcagca aacccttggg acaatccttc acatgagcaa
     5281 agtgctgatc tcaacattgg ttgtcgatgg tatgcttttt tgtactgtaa aaacgcgtgg
     5341 ttcatgtcta actctgctgt tttattgtgg ttgtggctca agtttttagt gtttgacgtt
     5401 gacgctgttt tcagaggagc tctttactaa tttatttgtc cgtgtcccaa cctgttactc
     5461 cccacgaccc tccagagttt ctggagcatt cttttctacc ctcaccctgc cagaccttga
     5521 tccattttga catttgttat gcactacttt tatatctctg tgagagattt ttccaacagt
     5581 cagctatttt atggcacact ttttttgact gatgacatct cctttgctat acctcaattt
     5641 ttggaattta gaaaagaaat cagtagtttt gcaatgttaa ttatttagat atttaatttc
     5701 gcagattttt aactttattt tcataatttc tgcttaatgt ttaaaattga agagcctttt
     5761 catgtattaa ataatgaact ctaaaataaa ttatatgata aaataattgg agatgccgaa
     5821 aatcattttc ccttcttaaa cagaagtaaa tatttgaaat gaagggaaat gcaagagaaa
     5881 caccttctcc taccagggtg aacgtgacgg aaatgctggt ttgtgtcacc ttcgttcctg
     5941 ttagggcaaa gctcattggt ctaatactgt gtccctccct gcctctcccc tacctctgat
     6001 ttgtttcgtt ttctgtttgt ttggggattc cttttccttt tatgtactac attcttattt
     6061 tctaactgtt aaacactgta ttagagtttt tttaatttac agatcatatt tattttacta
     6121 tttttgtaga aaattattaa ttttgattgt atttttgtat tttcaaagct ttttcatttg
     6181 tgttccctaa atgttcatat tgctgcccaa aagtatgaat gactgtggag gaaaaagtac
     6241 tttaaaaatc cacacttttt gttaagaagg aaacatttag catttatata tttgtgtatg
     6301 gaaaacactt gatattttat ccctgttgca tctggctgca cgagcctctc ctcaaagatg
     6361 ccacaaaact tgaatataac acattttgga aggctgacta acctcgattc tgtgttgtga
     6421 tgtgcaatac tgtttctaat gtttgtataa agatacagtg taaacctttt taatgcaaat
     6481 ttattttttt cattgcatat tttgcagact ttatccacag tgtcattttt tactgtcaga
     6541 aaagatgccc cttttgtcat tgcaactatt ttttaaaccc agaaatcttt gtactgatgt
     6601 aaatgattgt agttattttg gatagtgttt tgctaacaaa aggagagact tttttcatgc
     6661 atatttctat tttgtttttt tgggttttat tttattttaa tagtagtaaa atacttggaa
     6721 taatttttca tattcttgtc attaatatta ttttgtattt ttatgtgaaa atatataatt
     6781 ttatgacact aattgctaaa gtttatttta tgttgaatta tttttggagc tgaaatcttt
     6841 gtaatattaa agcaactagt ttctaattcc cagtttctgt atagaatcgc acaagtggtt
     6901 tatggagtgt ttggattgta actataaatg gttctttgat atgcaaatta atattttcag
     6961 ttgattttat tttatattcc taatggggtg ttaaagccgt tttttatttt tttctaaata
     7021 aaaagagaac ccatgctttt atggacacta ggtaaaacgc cttcagctta aaatttttgt
     7081 taaataattt agtttatttt attgttatct tccaggtgtc taaatctcca gtctgtctgt
     7141 tgtactggta atttaactct gtaatggaat agtttgctgc caactattta tattaagtca
     7201 tttttaaata tttgtaatat tgttgactga ctaataaact attaagttat tggcata
//
