LOCUS       NM_001415862            1904 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus carboxypeptidase A6 (Cpa6), mRNA.
ACCESSION   NM_001415862
VERSION     NM_001415862.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.14223.1,
                                           SRR26643288.21281.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-294               JAXUCZ010000005.1  13309660-13309953
            295-370             JAXUCZ010000005.1  13443058-13443133
            371-495             JAXUCZ010000005.1  13557477-13557601
            496-610             JAXUCZ010000005.1  13562845-13562959
            611-712             JAXUCZ010000005.1  13565242-13565343
            713-817             JAXUCZ010000005.1  13567490-13567594
            818-928             JAXUCZ010000005.1  13616195-13616305
            929-1019            JAXUCZ010000005.1  13617168-13617258
            1020-1222           JAXUCZ010000005.1  13657077-13657279
            1223-1307           JAXUCZ010000005.1  13666517-13666601
            1308-1904           JAXUCZ010000005.1  13670833-13671429
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q11"
     gene            1..1904
                     /gene="Cpa6"
                     /note="carboxypeptidase A6"
                     /db_xref="GeneID:312913"
                     /db_xref="RGD:1311764"
     exon            1..294
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     CDS             179..1495
                     /gene="Cpa6"
                     /EC_number="3.4.17.1"
                     /codon_start=1
                     /product="carboxypeptidase A6 precursor"
                     /protein_id="NP_001402791.1"
                     /db_xref="GeneID:312913"
                     /db_xref="RGD:1311764"
                     /translation="MKFLGKPRSLTAAFLPVCCLLLKILQPGHCHSYDNRYAGHKVIR
                     LIPKSEEEALALKSVSHQLKVDLWQPSSISYVSEGTITDVRVTQNASRTLLAILQETN
                     IQYKVLIEDLQKAVENENSVHTQRNRRSLSEYNYEVYHSLEDIQSWMHHLNQTQPGLV
                     RVFPIGRSFEGRSLLIIQLGRKSQVYKRAVWIDCGIHAREWIGPAFCQWFVKEAILTY
                     KTDPAMRKMLNHLYFYIMPVLNVDGYHFSWTHDRFWRKTRSRNSKFHCRGVDANRNWK
                     VKWCDEGASADPCDDTYCGPFPESEPEVKAVANFLRKHRKRIRAYLSFHAYAQMLLYP
                     YSYKHATIPNFSCVEFAAHKAVKALRSVHGIRYRHGPASQTLYVSSGNSMDWAYKNGI
                     PYSFAFELRDTGYFGFLLPEMLIKPTCTETMLAVKNITMHLLKNCP"
     exon            295..370
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            371..495
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            496..610
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            611..712
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            713..817
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            818..928
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1019
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1222
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1307
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1904
                     /gene="Cpa6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcttaata gcaactcccc ggctgcctaa agtgtcacat tttgctcatt cccaagcctt
       61 ctcccccacc cctttcccag acaacttgct ggtgagcagg gggtgttgtg agccacctcc
      121 agcctcttcc tttggtgact gcagttaaac aactttcaac tcctctcatt gcaacgctat
      181 gaagttcctc gggaagccca ggagcctcac agctgctttt ctgcctgttt gctgcctcct
      241 tttgaagatt ctgcaaccag ggcactgcca ctcttatgac aaccgctatg ctggacataa
      301 agtgataaga ctcatcccca aatctgaaga ggaagcactt gcactaaaga gtgtatccca
      361 ccaactcaag gtggacctat ggcagcccag cagtatctcc tatgtgtcag aggggacaat
      421 tactgatgtc cgtgttaccc aaaatgcttc cagaaccctg ttagcaatct tacaggaaac
      481 caacatccag tacaaggtcc tcatcgaaga tcttcagaaa gctgtggaaa atgaaaacag
      541 cgtgcacacc cagagaaaca gacggtctct atctgaatac aactacgagg tctatcactc
      601 tttagaagat attcagagtt ggatgcacca tctgaaccaa actcaacctg gcctcgtccg
      661 agttttccca attggaagat catttgaagg aaggtctctc ttgattatac agctgggcag
      721 aaaatcacaa gtctacaaaa gagctgtctg gatagactgc ggcattcatg caagagaatg
      781 gatcggtcct gccttttgtc agtggtttgt taaagaagcc attctgacct ataagactga
      841 cccagccatg agaaaaatgc tgaatcatct gtatttctat atcatgcctg tgttgaatgt
      901 cgatggatac catttcagct ggacacatga tcgattctgg agaaagacac ggtcaagaaa
      961 ctctaaattc cactgccgcg gagtcgatgc caaccgcaac tggaaagtga aatggtgcga
     1021 tgaaggagcc tctgcagacc cttgcgatga cacgtactgt ggtcctttcc cggagtctga
     1081 gcccgaggtg aaggctgtgg ctaacttcct tcgaaaacac aggaagcgca ttcgggcata
     1141 cctttctttt cacgcctacg ctcagatgtt gctgtatccc tattcttaca aacacgccac
     1201 aatccccaat ttcagctgtg tggagtttgc agctcacaaa gctgtgaagg cacttcggtc
     1261 agtgcacggg atacggtaca gacatggccc tgcctcccaa acgttgtatg taagctctgg
     1321 taactcaatg gattgggctt ataaaaatgg aataccctat tcatttgctt ttgaacttcg
     1381 agacactggg tattttggat ttttactgcc agagatgctc attaaaccca cctgcacaga
     1441 gaccatgctt gctgtgaaga atatcacaat gcacctgcta aagaactgtc cttgagagga
     1501 gcttgcatct agcctaccaa tccagagaaa gcaaatcctg accacaagct ccctggcaaa
     1561 tgtaactgct gagactggaa ggatccatgg accgtaaaga atctttcatg caattcaaca
     1621 ctttgcaaca acagcaaagt agggcacagc ctactttggt atgagaagaa aaatcacttt
     1681 atatcccttt agagtcttat ttgattacaa gggggaggga atgttttcaa attcctttgt
     1741 ctcaaaaagt gtacaaacta attgaggatt tccctcctct caactgctat gtcctcgatt
     1801 aagacctaca cgaccaacaa catttaatta cttggttctt atttgaagtg gaaacaatca
     1861 actgtatttc ttaataaata tataattttt caaagactaa catt
//
