LOCUS       XM_039080155            2706 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus cytochrome c oxidase assembly homolog
            COX15 (Cox15), transcript variant X2, mRNA.
ACCESSION   XM_039080155
VERSION     XM_039080155.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2706
                     /gene="Cox15"
                     /note="cytochrome c oxidase assembly homolog COX15;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 15 ESTs, 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 70 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:309391"
                     /db_xref="RGD:1312043"
     CDS             87..758
                     /gene="Cox15"
                     /codon_start=1
                     /product="COX15 homolog isoform X2"
                     /protein_id="XP_038936083.1"
                     /db_xref="GeneID:309391"
                     /db_xref="RGD:1312043"
                     /translation="MQRLFLPPLKALMGSRNVGLLVPKAASRAQCGGGSYGGRRPLRP
                     GQYGTITEVALQSGKGTVSLPSRAAERAVGRWLLVCSGTVAGAVILGGVTRLTESGLS
                     MVDWHLIKEMKPPTSQEEWEAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWG
                     RAVGLAYILPAAYFWRKGWLNRGMKGRVLALCGLVCFQDYVTNRDQQQPAITLPLRAL
                     AFIDL"
ORIGIN      
        1 cctgacccgg aagtgtttgt ccttttggta gagaagcgga ccgcagatcg ctggctggtg
       61 cgttccgcag aggctgtact gtcagtatgc aacggttgtt cctcccgccc ctcaaggcct
      121 tgatggggag ccgcaatgtc gggctcctgg tccctaaggc ggcatctaga gcacagtgtg
      181 gcggcggcag ctatggcggc aggcgtcctc tgaggccagg gcagtacggc accatcactg
      241 aagtggcttt gcaatctgga aaaggcacag tgtcccttcc ttcgagggca gccgagcggg
      301 cagtgggccg atggctcctg gtgtgcagtg gaacagtggc tggagcagtt attcttggag
      361 gagtgaccag gctgacggag tctggcctct caatggtaga ctggcattta ataaaggaga
      421 tgaagccacc cacaagccag gaagaatggg aagcggagtt ccaaaagtac cagcaatttc
      481 cggaatttaa aatcctgaat catgacatga cactggcgga attcaagttt atctggtaca
      541 tggaatactc acaccggatg tggggtcgag ctgtaggcct tgcatacatc ctgcctgctg
      601 cctacttttg gagaaagggt tggctcaacc gtggcatgaa aggacgtgtt cttgccctct
      661 gtggcttagt ctgtttccag gactatgtaa caaaccgtga ccaacagcaa ccagcaatca
      721 ccctgcctct cagggctcta gcatttatag acctctgaaa agtccccaga attccaaatg
      781 ccacacaatc acagaaacta tctgcagctg gcaaagtcac acccccttct agagcacgag
      841 gcaaatccta ggcagcagct gtggacaatc tgaagtagcc ccatgtccca cacctggata
      901 taataaataa catataatat ttctgtgttt tttaaagaaa tcaaaattct aaaattgtca
      961 ctgtagaaaa ctcagaaaga acagtttctg ggagaaaggt tggatacagt gtaactgatg
     1021 ttcaagtaca catggtgttt aaaagcatgt aagctggact taaggaaaag agctttgcag
     1081 gattcccaca gttgaagcta agagccaaga aaaggaatca gagaagacac ctacaagtac
     1141 ttgggtcaaa atgtaaagat cctgatgctg tcacaacatc aaagaaacat caacatttga
     1201 cctataggga actaggtggt taatttaact cagaagttaa attaaggaga tgagctaggt
     1261 aagacgagat taacaagctg gagagagcta tggttaagag cactgactgt tcttccagag
     1321 gaccaaggtt caactccagg cacccatgtg gcagctcaca actgtctgta actcctattt
     1381 aagggatctg acaccctcac atagatgtac atgcaggcaa aacaccaatg tacataaaat
     1441 ataaataaac aaattatttt aaaaagaaat taacaaggca atagaagctg cagaagagaa
     1501 tttaataaaa gttatcttaa cttttattac ttttattata ttttagtgac taggcaaagg
     1561 tagatggaat aaaatataac tttgataaaa taaaatgaag gtagaaattt aaactgtcat
     1621 ggttgtgtga ggaagagggg taggctagag aatttacatg gtacatacct tcattttccc
     1681 gtgtccctgc agaagagagg tagttctgat agccaggcta atcttgaaag gggaaggaaa
     1741 tatccacaaa gaattacctg aagaagtaga agaaactcgc ccttttgacc tggtcatatg
     1801 gggttgagtg tgtgccatga ttgtataaaa ttatcttact gtgtaagatt agaattgatg
     1861 tagtttctta tttgctagtt aaagcagaga ctcgtgaatc atgttctgtg aactttgtaa
     1921 gtagaatcat gcattttgtt ggggagggtg ggattttgtt gttatttggt tggttggttt
     1981 ggattggatt tatgagacag tctcatgtag caaaatctga ccagccagct atgcggccaa
     2041 gtatgacctc aagtgactga tctgctgccc ctgcttccca agggctggga ctataagcct
     2101 gtgcttatag tctggctcaa gcatgtgctt gctttaacaa tctccctcct gccttgtttc
     2161 ctaagagcta aagtcttttt ttgactgtga gtttggagtt taactttaaa tttcttcatc
     2221 tccacaaatt agttcccagt ttcatttttc ttagagagta gaaatagaga gtagaattgc
     2281 aaagcaatct tgcaaaatct tacacattcg tatgccctcc cccagatgtt tatcttatac
     2341 ccacctatct tgactaatta tttttaaagt taaactttat taaaattttc taaatacagt
     2401 ctagttttca tagaataaac tattctgttt catcggttta catgttaaat tatatcgagt
     2461 atttgcacag ttttgggtgc agataaacat ctgtggtctt atatacatga acctaagttt
     2521 acacagtgac cacacattag tactgttagt acagagttgc caacaggtca cggttcctga
     2581 acactaactg tatgttagtg tagatagaac actaactgta ggagatgtag aaaacagatc
     2641 gggtagggca ttctttctga taacgtagtt tgtcaacctt gtttgatttg cctctttcta
     2701 cctgac
//
