LOCUS       XM_039092277            2010 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus coenzyme Q2, polyprenyltransferase
            (Coq2), transcript variant X2, mRNA.
ACCESSION   XM_039092277
VERSION     XM_039092277.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092277.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2010
                     /gene="Coq2"
                     /gene_synonym="PHB:PPT; RGD1306722"
                     /note="coenzyme Q2, polyprenyltransferase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 68 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:498332"
                     /db_xref="RGD:1306722"
     CDS             35..823
                     /gene="Coq2"
                     /gene_synonym="PHB:PPT; RGD1306722"
                     /codon_start=1
                     /product="4-hydroxybenzoate polyprenyltransferase,
                     mitochondrial isoform X2"
                     /protein_id="XP_038948205.1"
                     /db_xref="GeneID:498332"
                     /db_xref="RGD:1306722"
                     /translation="MLRLGGAGLVRDLRVVWPAWLRGPGGLPLALARTTGTSGARDRR
                     APASGTQRGRALSLSAAAVVNSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAD
                     PGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDFDKKVERTANRPIAAGDISAFQSF
                     VFLGAQLTLALGVLLHLNYYSIAMGAASLLLVVTYPLMKRVTFWPQLALDLHRGHPQS
                     RGLLGKVYLQPHSRPTPVLRDCAWEFVQRQAGRDEGSGRCWRGK"
ORIGIN      
        1 ggtgacgtca ccaatcggcg tccagcctag cgtcatgctg cgcttgggag gcgcggggct
       61 agtgcgggac ctgcgggtgg tgtggcccgc atggctgcga ggtccgggtg gactcccgct
      121 ggccctggcg cgcaccacag ggacgtcggg agcgcgggac cggcgagcgc cggcctccgg
      181 gacgcagcgc gggcgcgcac tcagcctgtc cgccgcagcc gtagtgaact cggcgccccg
      241 cccgctgcag ccctacctgc ggctcatgcg cctggacaag cccatcggaa cctggctgct
      301 gtatttgcca tgcacttgga gcattggtct ggccgctgac ccgggttgtt ttcctgactg
      361 gtatatgtta tcactctttg gcactggagc tattctcatg cgtggagcag gctgtactat
      421 taatgacatg tgggaccgtg acttcgataa aaaggtcgag aggacagcaa accgcccaat
      481 cgccgcggga gacatttcag ccttccagtc cttcgtcttc cttggggcac agctgacctt
      541 ggcactgggc gttctcctgc atctgaacta ctacagtata gcaatgggag cagcatcctt
      601 acttcttgtc gtcacctacc ccctcatgaa aagagtcacg ttctggcctc agttagcctt
      661 ggatttacac cgtggacatc cacagagccg aggactgctg ggaaaagttt acctccaacc
      721 gcacagtagg cctactcctg ttcttaggga ttgtgcttgg gaatttgtac aaagacaagc
      781 cggacgagac gaagggagtg gacgctgttg gagaggaaag tgagcggaca agctgagctt
      841 ggtgtccccg ggaagcaggc aggaagaccg tgaggtcagg gcattgagtg acacagtagg
      901 accctgtctc aaagcagcac gccggctaga gttgtagctt gtgggaagag tgcgtggtca
      961 ccatgcgata cacctgagct ctgggtcagc atagactcgt ttgtaaaact caggtctgga
     1021 gaccacattg ctagatttga agtaagacgc actggggtag catgtgctgg acctcacggc
     1081 agctgcttcc cccacctccc ttccgggaac ctgggcttct gcacactgtg cagccttcgt
     1141 ccttgttcct ctcacctgga gtttcaggag cttcaggaaa accttgccta actcactgag
     1201 ttagtttttt cttttctttt ctttttttcg gagctgggga ccgaacccag ggccttgcgc
     1261 ttgctaggca agcgctctac cactgagcta aatccccagc cccctgagtg agttttttat
     1321 gaaaatggcc ggatacttta ttttctcact aagaatctcc tgtgagaact tcctgtgatc
     1381 tttgctcact tccaaagctg aattcaagag ccattctgat tctgggtgtt ttagaagagt
     1441 atgagcaaat aaatatgttt ccatccatgt gtggatgtcc atgatggccg ggcagatact
     1501 gtggtgtgtg cgtatctctc ctttatcttg gtggtctgtg ggatggtaac gcacagacat
     1561 gaactctttc ctctaagtta gcctttcatc gtgcgtctat cagagtagcc agaaaatcta
     1621 agtgaggtca agtcaccccc cagctcacac gccagggtcc cccagtcact cgggacacgc
     1681 caaggctgac tattggccgg cctctgacct gatctgatct cttaccctcc agacccgcac
     1741 tgtcctgcac tgtcccgcac tgtcccgcat gtcccgactc cacccagagc tgtgcgcttg
     1801 ctgtagagtg aagattctcc tcacagcagg ccttcaaatg acactctctc aaagaagctt
     1861 tgaattttca acaaaaccgc ctgtgtttct tttcattcat tttaggctta tttgtatttt
     1921 atgtaatgag tgttttacat gcatgtataa ttgtgcaccc ctgggattgg aattaaagat
     1981 ggtcgtgacc accctgtggg tgtaagagca
//
