LOCUS       XM_039086389             815 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus COPI coat complex subunit zeta 2
            (Copz2), transcript variant X1, mRNA.
ACCESSION   XM_039086389
VERSION     XM_039086389.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..815
                     /gene="Copz2"
                     /note="COPI coat complex subunit zeta 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 17 ESTs, 18 long SRA reads, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     64 samples with support for all annotated introns"
                     /db_xref="GeneID:360611"
                     /db_xref="RGD:1306948"
     CDS             194..535
                     /gene="Copz2"
                     /codon_start=1
                     /product="coatomer subunit zeta-2 isoform X1"
                     /protein_id="XP_038942317.1"
                     /db_xref="GeneID:360611"
                     /db_xref="RGD:1306948"
                     /translation="MTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKN
                     VEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRTDDSGLTEQSVAQVLQS
                     AKEQIKWSLLK"
ORIGIN      
        1 ggccggaggc ctggccacgt ccgcacccgg gggagggggc ctcggccgct caagccgggg
       61 gcgcagcgcc gcccacccga gccacggagc agaggtttca ggaaccttct ctctacacca
      121 tcaaggctgt cttcatccta gataatgatg gacgaaggct gctggccaag gtgaaatcgc
      181 atttttggcg ggcatgacta ttgtctacaa gagcagtatt gacatcttcc tatatgtggt
      241 gggatcgtcc tctgagaatg agctgatgct catgtctgtg ctggcctgcc tgtttgactc
      301 tctgagccac atcttaagga agaacgtgga gaaacgctgg ttgctggaga acatggacgg
      361 agccttcttg gtgctggatg aaattgttga tggaggtgtg atcctggaga gtgaccccca
      421 gcaagtgatc cagaaagtga attttaggac tgatgacagt ggcctaacag aacagagcgt
      481 ggcccaggtt cttcagtcag ccaaggaaca aattaagtgg tcgttattga aatgaagacc
      541 ttggagtcaa ggctcctttc ccagagaacc tttgccggtc cctgcgtaag ccccaaaatg
      601 tcaagaggca agagagacca ccctgccttc tccggcctct ctccctgagg cctcgtgcca
      661 gggattctga gacccaaaag cttggcccca gttctgtcat ccttgctcag cgtcccggcc
      721 tgcccctggg gtcatgggaa ccagcaaaat tgcctcccct tggacctctg acatctcagt
      781 cctaggactt aataaacttc caatttttcc ccaaa
//
